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Report for CCDS15502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15502.1 Public Mus musculus 1 Slamf1 23 108 98 CCDS HistoryNCBI Gene:27218Re-query CCDS DB by CCDS ID:15502.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15502.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015460.4 ENSMUSP00000015460.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015460.4Link to Ensembl Protein Viewer:ENSMUSP00000015460.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000015460Re-query CCDS DB by Protein ID:ENSMUSP00000015460
Original member Current member NCBI NM_013730.4 NP_038758.2 Accepted alive Link to Nucleotide Sequence:NM_013730.4Link to Protein Sequence:NP_038758.2Re-query CCDS DB by Nucleotide ID:NM_013730Re-query CCDS DB by Protein ID:NP_038758Link to BLAST:NP_038758.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038758.2 343 Q9QUM4-1 343 100% 0 0

Chromosomal Locations for CCDS 15502.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171767227 171767302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171774783 171775124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171777082 171777378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171787940 171788035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171792295 171792368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171798143 171798238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171799573 171799623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGATCCCAAAGGATCCCTTTCCTGGAGAATACTTCTGTTTCTCTCCCTGGCTTTTGAGTTGAGCTACG
GAACAGGTGGAGGTGTGATGGATTGCCCAGTGATTCTCCAGAAGCTGGGACAGGACACGTGGCTGCCCCT
GACGAATGAACATCAGATAAATAAGAGCGTGAACAAAAGTGTCCGCATCCTCGTCACCATGGCGACGTCC
CCAGGAAGCAAATCCAACAAGAAAATTGTGTCTTTTGATCTCTCTAAAGGGAGCTATCCAGATCACCTGG
AGGATGGCTACCACTTTCAATCAAAAAACCTGAGCCTGAAGATCCTCGGGAACAGGCGGGAGAGTGAAGG
ATGGTACTTGGTGAGCGTGGAGGAGAACGTTTCTGTTCAGCAATTCTGCAAGCAGCTGAAGCTTTATGAA
CAGGTCTCCCCTCCAGAGATTAAAGTGCTAAACAAAACCCAGGAGAACGAGAATGGGACCTGCAGCTTGC
TGTTGGCCTGCACAGTGAAGAAAGGGGACCATGTGACTTACAGCTGGAGTGATGAGGCAGGCACCCACCT
GCTGAGCCGAGCCAACCGCTCCCACCTCCTGCACATCACTCTTAGCAACCAGCATCAAGACAGCATCTAC
AACTGCACCGCAAGCAACCCTGTCAGCAGTATCTCTAGGACCTTCAACCTATCATCGCAAGCATGCAAGC
AGGAATCCTCCTCAGAATCGAGTCCATGGATGCAATATACTCTTGTACCACTGGGGGTCGTTATAATCTT
CATCCTGGTTTTCACGGCAATAATAATGATGAAAAGACAAGGTAAATCAAATCACTGCCAGCCACCAGTG
GAAGAAAAAAGCCTTACTATTTATGCCCAAGTACAGAAATCAGGGCCTCAAGAGAAGAAACTTCATGATG
CCCTAACAGATCAGGACCCCTGCACAACCATTTATGTGGCTGCCACAGAGCCTGCCCCAGAGTCTGTCCA
GGAACCAAACCCCACCACAGTTTATGCCAGTGTGACACTGCCAGAGAGCTGA

Translation (343 aa):
MDPKGSLSWRILLFLSLAFELSYGTGGGVMDCPVILQKLGQDTWLPLTNEHQINKSVNKSVRILVTMATS
PGSKSNKKIVSFDLSKGSYPDHLEDGYHFQSKNLSLKILGNRRESEGWYLVSVEENVSVQQFCKQLKLYE
QVSPPEIKVLNKTQENENGTCSLLLACTVKKGDHVTYSWSDEAGTHLLSRANRSHLLHITLSNQHQDSIY
NCTASNPVSSISRTFNLSSQACKQESSSESSPWMQYTLVPLGVVIIFILVFTAIIMMKRQGKSNHCQPPV
EEKSLTIYAQVQKSGPQEKKLHDALTDQDPCTTIYVAATEPAPESVQEPNPTTVYASVTLPES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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