NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46.2 Public Homo sapiens 1 ARHGEF16 24 110 108 CCDS HistoryNCBI Gene:27237Re-query CCDS DB by CCDS ID:46.2See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378378.9 ENSP00000367629.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378378.9Link to Ensembl Protein Viewer:ENSP00000367629.4Re-query CCDS DB by Nucleotide ID:ENST00000378378Re-query CCDS DB by Protein ID:ENSP00000367629
Original member Current member NCBI NM_014448.4 NP_055263.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014448.4Link to Protein Sequence:NP_055263.2Re-query CCDS DB by Nucleotide ID:NM_014448Re-query CCDS DB by Protein ID:NP_055263Link to BLAST:NP_055263.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055263.2 709 Q5VV41-1 709 100% 0 0

Chromosomal Locations for CCDS 46.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 3463085 3463672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3466148 3466193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3467168 3467337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3468880 3468936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3469433 3469593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3473078 3473230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3473393 3473522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3474708 3474782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3475970 3476062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3477875 3478026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3478424 3478612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3479517 3479590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3479812 3479913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3480448 3480587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGCCCAGCGGCACTCAGACAGCTCCTTGGAGGAGAAGCTCCTGGGACACCGCTTCCACTCGGAGCTCC
GGCTCGATGCCGGGGGGAACCCAGCCTCCGGGCTCCCAATGGTCCGTGGCTCCCCGCGTGTTAGAGACGA
TGCCGCCTTCCAGCCCCAGGTCCCGGCACCCCCACAGCCTCGGCCCCCGGGGCACGAGGAGCCATGGCCC
ATCGTCCTGAGCACAGAGAGCCCGGCGGCCCTCAAGCTGGGCACCCAACAGCTGATCCCTAAGAGCCTGG
CTGTGGCCAGCAAGGCAAAGACCCCAGCCCGCCACCAGAGCTTCGGGGCGGCTGTACTTAGCAGGGAGGC
CGCCCGGCGGGACCCTAAGCTCCTCCCAGCCCCCAGCTTCTCCCTGGATGACATGGACGTGGACAAGGAC
CCCGGGGGCATGCTGAGGCGGAACCTGCGGAACCAATCCTACCGGGCGGCCATGAAGGGCCTGGGGAAGC
CAGGTGGCCAGGGAGATGCCATCCAGCTAAGCCCTAAGCTCCAGGCTCTGGCTGAGGAACCCAGCCAGCC
TCATACTCGGAGCCCGGCCAAAAACAAGAAGACGCTGGGGAGGAAACGTGGGCACAAGGGTTCCTTCAAG
GACGACCCCCAGCTCTACCAGGAGATCCAGGAGCGGGGCCTGAACACCAGCCAGGAGTCTGATGACGACA
TCCTCGATGAGTCCTCCAGCCCCGAGGGAACCCAGAAGGTGGACGCCACCATTGTGGTCAAGAGCTACCG
GCCCGCCCAGGTCACCTGGAGCCAGCTCCCAGAGGTGGTGGAATTGGGCATCCTGGACCAGCTCTCCACT
GAGGAGCGGAAAAGGCAGGAGGCCATGTTCGAGATCCTCACGTCGGAGTTCTCCTACCAGCACAGCCTGA
GCATCCTGGTGGAGGAGTTCCTGCAGTCCAAGGAGCTGCGGGCGACCGTGACCCAGATGGAGCACCACCA
CCTCTTCTCCAACATCCTGGATGTCCTGGGTGCCAGTCAGAGGTTCTTCGAGGACCTGGAGCAGCGGCAC
AAGGCCCAGGTGCTGGTCGAGGACATCAGTGACATCCTGGAGGAGCACGCTGAGAAGCACTTCCACCCCT
ACATCGCCTACTGCTCCAACGAGGTCTACCAACAGCGCACGCTGCAGAAGCTGATAAGCAGCAACGCCGC
CTTCCGAGAGGCCCTGAGAGAGATTGAGAGGCGGCCGGCGTGCGGGGGCCTGCCCATGCTCTCCTTCCTG
ATCCTCCCCATGCAGCGGGTGACCCGGCTGCCCCTCCTGATGGATACGCTCTGCCTCAAGACCCAGGGCC
ACTCCGAAAGGTACAAGGCTGCCAGCCGTGCACTGAAGGCCATCAGCAAGCTGGTGAGGCAGTGCAACGA
GGGGGCCCACAGGATGGAGCGCATGGAGCAGATGTACACGCTGCACACACAGCTGGACTTCAGCAAGGTC
AAGTCCCTCCCACTGATCTCTGCCTCCCGGTGGCTGCTGAAGCGCGGAGAGCTGTTCTTAGTGGAAGAAA
CCGGACTTTTTCGAAAAATTGCCAGCCGGCCAACGTGCTACCTTTTCCTGTTCAACGATGTCCTGGTTGT
GACCAAGAAGAAGAGCGAGGAGAGCTACATGGTCCAGGACTACGCCCAGATGAACCACATCCAGGTGGAG
AAGATAGAGCCGTCTGAGCTCCCTCTGCCCGGGGGCGGCAACCGTAGCTCCTCCGTGCCCCACCCCTTCC
AGGTGACCCTGCTTCGCAACAGCGAGGGCCGCCAGGAGCAGCTCCTGCTCTCCTCGGACTCCGCGAGTGA
CCGGGCACGGTGGATCGTGGCGCTCACACACAGTGAGAGACAGTGGCAGGGCCTCTCCAGCAAAGGAGAC
CTGCCCCAGGTGGAGATCACCAAGGCCTTCTTCGCGAAGCAAGCAGACGAGGTCACACTGCAGCAGGCGG
ACGTGGTCCTGGTTCTGCAGCAGGAGGATGGGTGGCTCTATGGCGAGAGGCTCCGGGACGGAGAGACGGG
ATGGTTCCCCGAGGACTTTGCCCGCTTCATCACCAGCCGTGTGGCCGTGGAGGGCAATGTCCGCAGGATG
GAGCGTCTGCGGGTGGAGACGGACGTGTAG

Translation (709 aa):
MAQRHSDSSLEEKLLGHRFHSELRLDAGGNPASGLPMVRGSPRVRDDAAFQPQVPAPPQPRPPGHEEPWP
IVLSTESPAALKLGTQQLIPKSLAVASKAKTPARHQSFGAAVLSREAARRDPKLLPAPSFSLDDMDVDKD
PGGMLRRNLRNQSYRAAMKGLGKPGGQGDAIQLSPKLQALAEEPSQPHTRSPAKNKKTLGRKRGHKGSFK
DDPQLYQEIQERGLNTSQESDDDILDESSSPEGTQKVDATIVVKSYRPAQVTWSQLPEVVELGILDQLST
EERKRQEAMFEILTSEFSYQHSLSILVEEFLQSKELRATVTQMEHHHLFSNILDVLGASQRFFEDLEQRH
KAQVLVEDISDILEEHAEKHFHPYIAYCSNEVYQQRTLQKLISSNAAFREALREIERRPACGGLPMLSFL
ILPMQRVTRLPLLMDTLCLKTQGHSERYKAASRALKAISKLVRQCNEGAHRMERMEQMYTLHTQLDFSKV
KSLPLISASRWLLKRGELFLVEETGLFRKIASRPTCYLFLFNDVLVVTKKKSEESYMVQDYAQMNHIQVE
KIEPSELPLPGGGNRSSSVPHPFQVTLLRNSEGRQEQLLLSSDSASDRARWIVALTHSERQWQGLSSKGD
LPQVEITKAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETGWFPEDFARFITSRVAVEGNVRRM
ERLRVETDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH