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Report for CCDS72863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72863.1 Public Homo sapiens 1 RNF115 24 110 108 CCDS HistoryNCBI Gene:27246Re-query CCDS DB by CCDS ID:72863.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72863.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000582693.5 ENSP00000463650.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000582693.5Link to Ensembl Protein Viewer:ENSP00000463650.1Re-query CCDS DB by Nucleotide ID:ENST00000582693Re-query CCDS DB by Protein ID:ENSP00000463650
Original member Current member NCBI NM_014455.4 NP_055270.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014455.4Link to Protein Sequence:NP_055270.1Re-query CCDS DB by Nucleotide ID:NM_014455Re-query CCDS DB by Protein ID:NP_055270Link to BLAST:NP_055270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055270.1 304 Q9Y4L5 304 100% 0 0

Chromosomal Locations for CCDS 72863.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 145746866 145746997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145747995 145748110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145750407 145750500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145751438 145751510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145752978 145753049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145771711 145771919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145784539 145784596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145788908 145788966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145823772 145823873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGGCGGAGGCTTCGGCGGCCGGGGCGGACTCGGGCGCCGCTGTAGCCGCCCACCGGTTTTTCTGCCACT
TTTGCAAGGGCGAGGTCAGCCCCAAACTACCGGAATATATATGTCCCAGATGTGAATCAGGCTTTATTGA
AGAAGTGACAGATGATTCCAGTTTTTTAGGTGGTGGCGGCAGTCGGATAGACAATACCACAACAACACAT
TTTGCAGAGCTTTGGGGCCATTTGGATCACACGATGTTTTTTCAAGATTTTAGACCCTTTCTAAGTAGCA
GTCCACTGGACCAAGATAATAGAGCCAATGAAAGGGGTCACCAGACTCACACTGACTTCTGGGGAGCAAG
ACCTCCACGGTTGCCATTGGGTCGGAGATACAGATCTCGAGGAAGTTCTCGTCCTGACAGATCTCCAGCT
ATTGAAGGAATACTACAACACATCTTTGCAGGATTCTTTGCAAATTCTGCCATTCCTGGATCTCCACACC
CTTTTTCCTGGAGCGGGATGCTGCACTCCAACCCTGGGGACTATGCCTGGGGTCAGACAGGGCTTGATGC
CATTGTAACCCAGCTTTTAGGACAACTGGAAAACACAGGCCCTCCCCCAGCTGACAAGGAAAAGATCACA
TCTCTTCCAACAGTGACAGTAACTCAGGAACAAGTTGATATGGGTTTAGAGTGTCCAGTATGCAAAGAAG
ATTACACAGTTGAAGAGGAAGTCCGGCAGTTACCTTGCAATCACTTCTTTCACAGCAGTTGTATTGTGCC
GTGGCTAGAACTGCATGACACATGTCCTGTATGTAGGAAGAGCTTAAATGGTGAGGACTCTACTCGGCAA
AGCCAGAGCACTGAGGCCTCTGCAAGCAACAGATTTAGCAATGACAGTCAGCTACATGACCGATGGACTT
TCTGA

Translation (304 aa):
MAEASAAGADSGAAVAAHRFFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGGSRIDNTTTTH
FAELWGHLDHTMFFQDFRPFLSSSPLDQDNRANERGHQTHTDFWGARPPRLPLGRRYRSRGSSRPDRSPA
IEGILQHIFAGFFANSAIPGSPHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKIT
SLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQ
SQSTEASASNRFSNDSQLHDRWTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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