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Report for CCDS29306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29306.1 Public Mus musculus 18 Malt1 23 108 98 CCDS HistoryNCBI Gene:240354Re-query CCDS DB by CCDS ID:29306.1Re-query CCDS DB by GeneID:240354See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29306.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049248.6 ENSMUSP00000048376.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049248.6Link to Ensembl Protein Viewer:ENSMUSP00000048376.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049248Re-query CCDS DB by Protein ID:ENSMUSP00000048376
Original member NCBI NM_172833.3 NP_766421.1 Updated not alive Link to Nucleotide Sequence:NM_172833.3Link to Protein Sequence:NP_766421.1Re-query CCDS DB by Nucleotide ID:NM_172833Re-query CCDS DB by Protein ID:NP_766421
Current member NCBI NM_172833.4 NP_766421.1 Accepted alive Link to Nucleotide Sequence:NM_172833.4Link to Protein Sequence:NP_766421.1Re-query CCDS DB by Nucleotide ID:NM_172833Re-query CCDS DB by Protein ID:NP_766421Link to BLAST:NP_766421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766421.1 821 Q2TBA3-2 821 100% 0 0

Chromosomal Locations for CCDS 29306.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65431172 65431398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65437822 65437988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65444832 65444953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65447553 65447712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65448179 65448357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65448922 65449018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65451547 65451573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65453675 65453704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65458169 65458372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65462736 65462913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65464041 65464115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65464714 65464841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65470389 65470538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65473000 65473157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65475133 65475258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65475988 65476425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2466 nt):
ATGTCGCTGTGGGGGCAGCCGCTGCAGGCCTCACCTCCCCTGGCCGTGCGGCAGCCCCCTACCGCGTCCT
CGGGACCTTCGACCTCCCCTCCAGCCGGCGCAACCCTCAACCGCCTGCCCGAGCCGCTGCTGCGGAGGCT
CAGCGAGAGCTTGGACCGCGCTCCGGAGGGCCGGGGCTGGCGGCAGCTGGCCGAGCTGGCGGGCAGTCGG
GGACGCCTCCGGCTCAGTGGCCTGGACCTGGAACAGTGTTCTCTTAAAGTATTGGAGCCAGAGGGAAGCC
CAAGTTTGTGTTTATTGAAACTAATGGGTGAAAAAGGATGTACAGTCACAGAACTGAGCGACTTCCTACA
GGCTTTGGAGCACACTGAGGTTCTTCCGCTTCTCAACCCCCCAGGATTAAAGATCACTGTAAACCCAGAA
TCCAAGGCAGTGTTGGCTGGACAGTTTGTAAAACTGTGCTGCCGGGCAACTGGACATCCTTTTGTACAAT
ATCAATGGTTCAAAATGAATAAAGAGATCCCATATGGAAATTCATCAGAACTTGTTTTTAACACAGTGCA
TGTAAAAGATGCAGGCTTTTATGTCTGCCGGGTTAACAACAGTTCCACTTTTGAATTTAGCCAGTGGTCA
CAGCTGGATGTGTGTGATGTGGCAGAAGTAACAGACAGCTTCCAGGGAAGTATGGATGGCATCTCAGAAT
CCAGGTTGCAAATCTGTGTTGAACCAAGGTCCCAAAGGCTGGTGCCAGGCAGCATGTTGTTGTTACAGTG
TGTTGCTATTGGAAGTCCTATGCCTCACTACCAGTGGTTTAAAGATGAATCACCATTAACACATGAGACA
AAAAAGCACTACACGGTTCCATATGTGGATATAGAACATGAAGGAACCTACTGGTGTCATGTATATAATG
ACCGAGACAGTCAAGATAGCAAGAAGGCAGAAGTCACCATAGATGAATTAAACAATTTGGGGCATCCTGA
TAATAAAGAACAAACTGGCCAGCCTTTGGCAAAGGACAAAGTCGCCCTTTTGATAGGGAATATGAGTTAC
TGGGAGCATCCCAAGCTTAAAGCGCCTTTGGTGGATGTGTATGAATTGACCAACTTACTAAGACAACTAG
ATTTCAAAGTTGTCTCACTGTTGGACCTTACTGAATATGAGATGTGTAACGCTGTGGATGAATTTTTACT
ACTTTTAGACAAAGGAGTATATGGATTGTTATATTATGCAGGGCACGGTTATGAAAACTTTGGAAACAGT
TTCATGGTCCCTGTTGATGCTCCAAATCCATATAGGTCTGAAAATTGCCTATGCGTACAAAACATACTGA
AATTAATGCAAGAAAAGGAGACTGGCCTGAATGTGTTCCTGTTGGATATGTGTCGGAAAAGAAATGACTA
CGATGATACCATTCCAATCTTGGACGCACTGAAAGTCACTGCCAACATTGTGTTTGGATATGCCACGTGC
CAAGGAGCAGAAGCCTTTGAAATCCAGCATTCTGGGTTGGCAAATGGGATTTTTATGAAATTTTTAAAAG
ATAGATTATTAGAAGACAAGAAAATTACTGTGTTACTGGATGAAGTTGCAGAAGATATGGGTAAATGTCA
CCTTACCAAAGGCAGACAAGCTCTAGAGATTCGCAGCAGCTTGTCTGAAAAGAGAGCACTTACTGATCCA
GTCCAGGGAGCACCTTGCTCTGCAGAGGCTCTGGTGCGCAATCTACAGTGGGCCAAGGCTCATGAACTTC
CAGAAAGTATGTGCCTTAAATTTCAGTGTGGCGTTCACATTCAATTAGGATTTGCCGCAGAGTTCTCCAA
TGTCATGATAATCTACACAAGTATAGTCCACAAACCACCTGAGATAATAATGTGTGACGCCTATGTTACT
GATTTCCCTCTTGACCTAGATATTGATCCAAAACATGCAAACAAGGGGACTCCTGAAGAAACTGGCAGCT
ACTTAGTATCAAAAGACCTTCCCAAGCACTGCCTCTACACTAGACTCAGCTCACTACAAAAATTAAAGGA
ACATCTGATCTTCACAGTCTGTCTGTCCTATCAGTATTCAGGACTAGAAGACACTGTGGAGGAGAAGCAG
GAGGTGAACGTGGGGAAGCCTCTTATTGCCAAGCTAGACATGCACCGAGGACTGGGCAGGAAGACTTGCT
TCCAAGCTTGTCGTATGCCTGACGAGCCGTACCACAGCTCCACATCTACCTCAGCGGGAGCGGGGCATTT
CCATTCCTCTCAGGACTCATTCCATGATGTGTACCATTCACATCTTGGCAATGCAGACAGTGGTATGCCA
CCAGACAGGTGTCATTGCAGCCGGACTCCACACACATTCATTTCAAATTATCCCCCCCACCACTACTGCC
AGTTTGGTAGAAGTAATGTGCCCGTAGAGACAACTGATGAAATGCCATTCAGTTTTTCTGACAGGCTTAT
GATTTCTGAAAACTGA

Translation (821 aa):
MSLWGQPLQASPPLAVRQPPTASSGPSTSPPAGATLNRLPEPLLRRLSESLDRAPEGRGWRQLAELAGSR
GRLRLSGLDLEQCSLKVLEPEGSPSLCLLKLMGEKGCTVTELSDFLQALEHTEVLPLLNPPGLKITVNPE
SKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPYGNSSELVFNTVHVKDAGFYVCRVNNSSTFEFSQWS
QLDVCDVAEVTDSFQGSMDGISESRLQICVEPRSQRLVPGSMLLLQCVAIGSPMPHYQWFKDESPLTHET
KKHYTVPYVDIEHEGTYWCHVYNDRDSQDSKKAEVTIDELNNLGHPDNKEQTGQPLAKDKVALLIGNMSY
WEHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMCNAVDEFLLLLDKGVYGLLYYAGHGYENFGNS
FMVPVDAPNPYRSENCLCVQNILKLMQEKETGLNVFLLDMCRKRNDYDDTIPILDALKVTANIVFGYATC
QGAEAFEIQHSGLANGIFMKFLKDRLLEDKKITVLLDEVAEDMGKCHLTKGRQALEIRSSLSEKRALTDP
VQGAPCSAEALVRNLQWAKAHELPESMCLKFQCGVHIQLGFAAEFSNVMIIYTSIVHKPPEIIMCDAYVT
DFPLDLDIDPKHANKGTPEETGSYLVSKDLPKHCLYTRLSSLQKLKEHLIFTVCLSYQYSGLEDTVEEKQ
EVNVGKPLIAKLDMHRGLGRKTCFQACRMPDEPYHSSTSTSAGAGHFHSSQDSFHDVYHSHLGNADSGMP
PDRCHCSRTPHTFISNYPPHHYCQFGRSNVPVETTDEMPFSFSDRLMISEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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