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Report for CCDS28662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28662.1 Public Mus musculus 17 Nelfe 23 108 98 CCDS HistoryNCBI Gene:27632Re-query CCDS DB by CCDS ID:28662.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097343.10 ENSMUSP00000094956.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097343.10Link to Ensembl Protein Viewer:ENSMUSP00000094956.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000097343Re-query CCDS DB by Protein ID:ENSMUSP00000094956
Original member Current member EBI ENSMUST00000165953.2 ENSMUSP00000131195.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165953.2Link to Ensembl Protein Viewer:ENSMUSP00000131195.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165953Re-query CCDS DB by Protein ID:ENSMUSP00000131195
Original member Current member EBI ENSMUST00000173357.7 ENSMUSP00000134272.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173357.7Link to Ensembl Protein Viewer:ENSMUSP00000134272.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173357Re-query CCDS DB by Protein ID:ENSMUSP00000134272
Original member Current member NCBI NM_001045863.1 NP_001039328.1 Accepted alive Link to Nucleotide Sequence:NM_001045863.1Link to Protein Sequence:NP_001039328.1Re-query CCDS DB by Nucleotide ID:NM_001045863Re-query CCDS DB by Protein ID:NP_001039328Link to BLAST:NP_001039328.1
Original member Current member NCBI NM_001045864.1 NP_001039329.1 Accepted alive Link to Nucleotide Sequence:NM_001045864.1Link to Protein Sequence:NP_001039329.1Re-query CCDS DB by Nucleotide ID:NM_001045864Re-query CCDS DB by Protein ID:NP_001039329Link to BLAST:NP_001039329.1
Original member Current member NCBI NM_138580.2 NP_613046.2 Accepted alive Link to Nucleotide Sequence:NM_138580.2Link to Protein Sequence:NP_613046.2Re-query CCDS DB by Nucleotide ID:NM_138580Re-query CCDS DB by Protein ID:NP_613046Link to BLAST:NP_613046.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001039328.1 367 P19426-2 367 100% 0 0
NP_001039329.1 367 P19426-2 367 100% 0 0
NP_613046.2 367 P19426-2 367 100% 0 0

Chromosomal Locations for CCDS 28662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34850919 34850993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34852344 34852413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34852516 34852661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34853425 34853499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34853613 34853650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34853808 34854133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34854221 34854365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34854445 34854499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34854696 34854798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34856088 34856158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGTTGGTGATACCTCCGGGGCTGAGTGAAGAGGAAGAGGCACTGCAGAAGAAGTTCAACAAACTCAAGA
AGAAGAAAAAGGCATTGCTGGCTCTGAAGAAGCAGAGCAGCAGCGGCCCAGCGAGCCAGGGCGGTGTCAA
ACGCTCACTGTCAGAGCAGCCTGTGGTGGACACTGCCACAGCAACAGAACAGGCCAAACAACTGGTGAAG
TCAGGAGCCATCAGTGCCATCAAGGCTGAAACTAAGAACTCAGGCTTCAAACGTTCTCGGACCCTGGAAG
GGAAGTTAAAGGACCCAGAGAAGGGGCCTGTCCCCACTTTCCAGCCGTTCCAGAGGAGCATGTCTGCTGA
TGAGGACCTACAGGAGCCATCCAGACGTCCCCAGAGGAAATCTCTGTATGAAAGCTTTGTGTCTTCTAGT
GATCGGCTTCGGGAACTGGGACAAGATGGAGAAGAAGCAGAGGCCCCCGGGGCTGGTGATGGCCCACCTC
GAGGCTTTGACTGGAGCTATGAAGAGCATGGTAGCGCCCGCTCCTCAGCCTCCCCTCCCCGAAGCCGCAG
CAGGGACCGAAGTCATGACCGGAGCCGAGATAGGGATCGGGACAAAGAGAGAGACAGAGACCGAGATCGA
GATCGAGACAGAGACCGGGATAAAGACAAAGACAGAGACCGGGATCGAGACAGAGACCGGGACCGAGATC
GGGAACGAGACCGAGAGGGCCCTTTCCGCAGGTCAGACTCATTCCCCGAACGGAGGGCCCCTCGAAAGGG
GAACACACTGTATGTGTATGGAGAGGACATGACGCCCACCCTCCTCCGCGGGGCCTTCTCTCCCTTTGGA
AATATCATCGACCTCTCCATGGACCCACCCAGAAACTGTGCCTTCGTCACCTACGAGAAGATGGAGTCTG
CAGATCAGGCTGTTGCTGAGCTCAATGGGACCCAGGTGGAATCTGTGCAGCTTAAAGTCAACATAGCCCG
AAAACAGCCCATGCTGGACGCTGCTACTGGCAAATCTGTCTGGGGCTCCCTTGCTGTCCAGAACAGCCCT
AAGGGTTGCCATCGAGACAAGAGGACCCAGATTGTGTACAGTGACGATCTATAG

Translation (367 aa):
MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSGPASQGGVKRSLSEQPVVDTATATEQAKQLVK
SGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSMSADEDLQEPSRRPQRKSLYESFVSSS
DRLRELGQDGEEAEAPGAGDGPPRGFDWSYEEHGSARSSASPPRSRSRDRSHDRSRDRDRDKERDRDRDR
DRDRDRDKDKDRDRDRDRDRDRDRERDREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFG
NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSP
KGCHRDKRTQIVYSDDL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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