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Report for CCDS24947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24947.1 Public Mus musculus 11 Med11 23 108 98 CCDS HistoryNCBI Gene:66172Re-query CCDS DB by CCDS ID:24947.1Re-query CCDS DB by GeneID:66172See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019067.7 ENSMUSP00000019067.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019067.7Link to Ensembl Protein Viewer:ENSMUSP00000019067.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019067Re-query CCDS DB by Protein ID:ENSMUSP00000019067
Original member Current member NCBI NM_025397.3 NP_079673.2 Accepted alive Link to Nucleotide Sequence:NM_025397.3Link to Protein Sequence:NP_079673.2Re-query CCDS DB by Nucleotide ID:NM_025397Re-query CCDS DB by Protein ID:NP_079673Link to BLAST:NP_079673.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079673.2 117 Q9D8C6 117 100% 0 0

Chromosomal Locations for CCDS 24947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70451979 70452063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70452208 70452338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70453102 70453239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGCTACCTACAGTCTGGCGAACGAGCGGCTGCGCGCCCTGGAGGATATCGAGCGTGAAATCGGCGCCA
TCCTCCAGAACGCAGGAACGGCGATCCTGGAACTGTCCAAGGAAAAGACTAACGAGCGGCTCCTCGACCG
GCAGGCGGCAGCCTTCACCACTTCTGTGCAGCACGTGGAGGCAGAGCTATCCGCTCAAATCCGCTACCTC
ACTCAGGTGGCCACAGGGCAGCCGCATGAGGGCTCCAGCTACTCTTCCAGGAAGGACTGTCAAATGGCTC
TAAAGCGAGTAGACTACGCCCGCCTCAAGATTAGTGATGTGGCGAGAACCTGTGAGCAGATGCTGGAGAA
CTGA

Translation (117 aa):
MATYSLANERLRALEDIEREIGAILQNAGTAILELSKEKTNERLLDRQAAAFTTSVQHVEAELSAQIRYL
TQVATGQPHEGSSYSSRKDCQMALKRVDYARLKISDVARTCEQMLEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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