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Report for CCDS18611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18611.1 Public Mus musculus 4 Hpcal4 23 108 98 CCDS HistoryNCBI Gene:170638Re-query CCDS DB by CCDS ID:18611.1Re-query CCDS DB by GeneID:170638See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18611.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059667.8 ENSMUSP00000051487.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059667.8Link to Ensembl Protein Viewer:ENSMUSP00000051487.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000059667Re-query CCDS DB by Protein ID:ENSMUSP00000051487
Original member Current member EBI ENSMUST00000106246.7 ENSMUSP00000101853.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106246.7Link to Ensembl Protein Viewer:ENSMUSP00000101853.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106246Re-query CCDS DB by Protein ID:ENSMUSP00000101853
Original member NCBI NM_174998.4 NP_778163.1 Updated not alive Link to Nucleotide Sequence:NM_174998.4Link to Protein Sequence:NP_778163.1Re-query CCDS DB by Nucleotide ID:NM_174998Re-query CCDS DB by Protein ID:NP_778163
Current member NCBI NM_174998.5 NP_778163.1 Accepted alive Link to Nucleotide Sequence:NM_174998.5Link to Protein Sequence:NP_778163.1Re-query CCDS DB by Nucleotide ID:NM_174998Re-query CCDS DB by Protein ID:NP_778163Link to BLAST:NP_778163.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778163.1 191 Q8BGZ1 191 100% 0 0

Chromosomal Locations for CCDS 18611.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 123188722 123188883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123189025 123189240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123190658 123190855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGGGAAAAACAACAGCAAGCTGGCCCCCGAGGTGCTGGAAGACCTGGTCCAGAACACGGAGTTCAGCG
AGCAGGAGCTAAAGCAGTGGTATAAGGGTTTCCTGAAGGACTGCCCCAGTGGCATCCTCAACCTGGAGGA
GTTTCAGCAACTCTATATCAAGTTCTTCCCTTATGGAGACGCGTCCAAGTTTGCGCAGCATGCTTTCCGC
ACCTTCGACAAGAACGGCGATGGCACCATCGACTTCCGGGAGTTCATCTGCGCCCTTTCTGTCACCTCCC
GTGGCAGCTTCGAGCAGAAGCTCAACTGGGCCTTTGAGATGTACGATCTGGACGGTGACGGCCGCATCAC
ACGGCTGGAGATGCTGGAGATCATCGAGGCTATCTATAAGATGGTGGGCACCGTGATCATGATGCGCATG
AACCAGGATGGGCTCACACCCCAGCAGCGTGTGGACAAGATCTTCAAGAAGATGGACCAGGATAAGGATG
ACCAGATTACGCTGGAGGAGTTCAAGGAGGCGGCCAAGAGTGACCCGTCCATCGTGTTGCTCCTGCAGTG
TGACATGCAGAAGTAG

Translation (191 aa):
MGKNNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFR
TFDKNGDGTIDFREFICALSVTSRGSFEQKLNWAFEMYDLDGDGRITRLEMLEIIEAIYKMVGTVIMMRM
NQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEAAKSDPSIVLLLQCDMQK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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