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Report for CCDS16429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16429.1 Public Mus musculus 2 Pacsin3 23 108 98 CCDS HistoryNCBI Gene:80708Re-query CCDS DB by CCDS ID:16429.1Re-query CCDS DB by GeneID:80708See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028694.11 ENSMUSP00000028694.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028694.11Link to Ensembl Protein Viewer:ENSMUSP00000028694.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028694Re-query CCDS DB by Protein ID:ENSMUSP00000028694
Original member Current member EBI ENSMUST00000059566.10 ENSMUSP00000054391.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059566.10Link to Ensembl Protein Viewer:ENSMUSP00000054391.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059566Re-query CCDS DB by Protein ID:ENSMUSP00000054391
Original member Current member EBI ENSMUST00000111349.8 ENSMUSP00000106981.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111349.8Link to Ensembl Protein Viewer:ENSMUSP00000106981.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111349Re-query CCDS DB by Protein ID:ENSMUSP00000106981
Original member Current member EBI ENSMUST00000168916.7 ENSMUSP00000129175.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168916.7Link to Ensembl Protein Viewer:ENSMUSP00000129175.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168916Re-query CCDS DB by Protein ID:ENSMUSP00000129175
Original member Current member NCBI NM_001289677.1 NP_001276606.1 Accepted alive Link to Nucleotide Sequence:NM_001289677.1Link to Protein Sequence:NP_001276606.1Re-query CCDS DB by Nucleotide ID:NM_001289677Re-query CCDS DB by Protein ID:NP_001276606Link to BLAST:NP_001276606.1
Original member Current member NCBI NM_001289678.1 NP_001276607.1 Accepted alive Link to Nucleotide Sequence:NM_001289678.1Link to Protein Sequence:NP_001276607.1Re-query CCDS DB by Nucleotide ID:NM_001289678Re-query CCDS DB by Protein ID:NP_001276607Link to BLAST:NP_001276607.1
Original member Current member NCBI NM_028733.4 NP_083009.1 Accepted alive Link to Nucleotide Sequence:NM_028733.4Link to Protein Sequence:NP_083009.1Re-query CCDS DB by Nucleotide ID:NM_028733Re-query CCDS DB by Protein ID:NP_083009Link to BLAST:NP_083009.1
Original member Current member NCBI NM_030880.3 NP_112019.2 Accepted alive Link to Nucleotide Sequence:NM_030880.3Link to Protein Sequence:NP_112019.2Re-query CCDS DB by Nucleotide ID:NM_030880Re-query CCDS DB by Protein ID:NP_112019Link to BLAST:NP_112019.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276606.1 424 Q99JB8 424 100% 0 0
NP_001276607.1 424 Q99JB8 424 100% 0 0
NP_083009.1 424 Q99JB8 424 100% 0 0
NP_112019.2 424 Q99JB8 424 100% 0 0

Chromosomal Locations for CCDS 16429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91260208 91260261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91260404 91260560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91261171 91261406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91261511 91261666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91262768 91262943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91263059 91263179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91263287 91263423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91263765 91263886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91264191 91264306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGCTCCAGAGGAGGACGCCGGAGGGGAGGTCCTAGGGGGCAGTTTCTGGGAGGCTGGCAACTACAGAC
GGACGGTGCAGAGGGTTGAGGATGGGCACAGGCTGTGTGGGGACCTGGTTAGCTGCTTCCAAGAACGTGC
CCGCATTGAGAAGGCCTACGCCCAGCAGCTGGCTGACTGGGCCCGCAAGTGGAGGGGTGCTGTGGAGAAG
GGCCCACAGTACGGCACCCTGGAGAAGGCCTGGCATGCCTTCTTCACTGCGGCTGAGAGGCTGAGCGAGC
TGCACTTGGAGGTGAGGGAGAAGTTGCACGGTCCAGACAGCGAGCGAGTGCGGACCTGGCAGCGAGGGGC
TTTCCACCGGCCAGTGCTGGGGGGCTTTCGGGAAAGCCGGGCTGCAGAGGATGGTTTCCGTAAAGCTCAG
AAGCCCTGGCTAAAGAGGCTGAAGGAGGTTGAGGCTTCTAAGAAGAGCTACCACACAGCCCGCAAGGATG
AGAAGACAGCCCAGACCCGGGAGAGCCACGCGAAGGCAGACAGCTCCATGTCCCAGGAGCAGCTTCGAAA
ATTACAGGAGCGGGTGGGCCGCTGCACCAAGGAGGCAGAGAAGATGAAAACCCAGTATGAGCAGACCCTG
GCCGAGCTAAATCGCTACACCCCACGCTACATGGAGGACATGGAGCAGGCTTTTGAGAGCTGCCAGGCTG
CTGAGCGCCAGCGGCTTCTCTTCTTCAAGGATGTCTTGCTCACCCTGCATCAACACCTCGACCTCTCCAG
TAGCGACAAGTTCCATGAACTCCATCGAGACCTGCAGCAGAGCATTGAGGCTGCCAGTGATGAAGAGGAT
CTGCGCTGGTGGCGGAGCACACACGGGCCTGGCATGGCCATGAACTGGCCACAGTTTGAGGAATGGTCGT
TAGACACACAGAGAGCCATCAGCCGCAAGGAGAAGGGTGGCCGGAGCCCAGATGAGGTTACTCTGACCAG
CATTGTACCGACAAGAGATGGCACCGCACCCCCACCCCAGTCCCCATCGTCCCCGGGTAGCGGGCAGGAC
GAGGACTGGTCAGATGAGGAGAGTCCCCGGAAAGTTGCCACTGGGGTGAGGGTACGGGCGCTTTATGACT
ATGCTGGCCAGGAGGCTGATGAGCTGAGCTTCCGAGCAGGGGAAGAGTTGCTGAAGATGAGCGAGGAGGA
TGAGCAGGGCTGGTGCCAGGGCCAGCTGCAGAGTGGCCGCATTGGTCTGTACCCTGCCAATTACGTAGAA
TGTGTGGGCGCCTGA

Translation (424 aa):
MAPEEDAGGEVLGGSFWEAGNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEK
GPQYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRESRAAEDGFRKAQ
KPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTL
AELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKFHELHRDLQQSIEAASDEED
LRWWRSTHGPGMAMNWPQFEEWSLDTQRAISRKEKGGRSPDEVTLTSIVPTRDGTAPPPQSPSSPGSGQD
EDWSDEESPRKVATGVRVRALYDYAGQEADELSFRAGEELLKMSEEDEQGWCQGQLQSGRIGLYPANYVE
CVGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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