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Report for CCDS184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
184.1 Public Homo sapiens 1 IGSF21 24 110 108 CCDS HistoryNCBI Gene:84966Re-query CCDS DB by CCDS ID:184.1Re-query CCDS DB by GeneID:84966See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 184.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251296.4 ENSP00000251296.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000251296.4Link to Ensembl Protein Viewer:ENSP00000251296.1Re-query CCDS DB by Nucleotide ID:ENST00000251296Re-query CCDS DB by Protein ID:ENSP00000251296
Original member Current member NCBI NM_032880.5 NP_116269.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032880.5Link to Protein Sequence:NP_116269.3Re-query CCDS DB by Nucleotide ID:NM_032880Re-query CCDS DB by Protein ID:NP_116269Link to BLAST:NP_116269.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116269.3 467 Q96ID5 467 100% 0 0

Chromosomal Locations for CCDS 184.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 18108129 18108198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18227898 18228010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18291866 18291987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18334892 18335010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18362115 18362230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18365223 18365697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18376310 18376395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18376800 18376992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18377393 18377431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18378256 18378326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGCGAACCGCCCCGAGCCTCCGCCGCTGCGTCTGCCTGCTGCTCGCCGCGATCCTGGACCTGGCGCGCG
GCTACCTGACAGTCAACATTGAGCCTCTCCCCCCTGTGGTGGCTGGAGACGCCGTGACTTTGAAGTGTAA
CTTCAAGACAGATGGGCGCATGCGGGAGATCGTGTGGTACCGGGTGACGGATGGTGGCACCATCAAGCAA
AAGATCTTCACCTTCGACGCCATGTTCTCCACCAACTACTCACACATGGAGAACTACCGCAAGCGAGAGG
ACCTGGTGTACCAGTCCACTGTGAGGCTGCCCGAGGTCCGGATCTCAGACAATGGTCCCTATGAGTGCCA
TGTGGGCATCTACGACCGCGCCACCAGGGAGAAGGTGGTCCTGGCATCAGGCAACATCTTCCTCAACGTC
ATGGCTCCTCCCACCTCCATTGAAGTGGTGGCTGCTGACACACCAGCCCCCTTCAGCCGCTACCAAGCCC
AGAACTTCACGCTGGTCTGCATCGTGTCTGGAGGAAAACCAGCACCCATGGTTTATTTCAAACGAGATGG
GGAACCAATCGACGCAGTGCCCCTATCAGAGCCACCAGCTGCGAGCTCCGGCCCCCTACAGGACAGCAGG
CCCTTCCGCAGCCTTCTGCACCGTGACCTGGATGACACCAAGATGCAGAAGTCACTGTCCCTCCTGGACG
CCGAGAACCGGGGTGGGCGACCCTACACGGAGCGCCCCTCCCGTGGCCTGACCCCAGATCCCAACATCCT
CCTCCAGCCAACCACAGAGAACATACCAGAGACGGTCGTGAGCCGTGAGTTTCCCCGCTGGGTCCACAGC
GCCGAGCCCACCTACTTCCTGCGCCACAGCCGCACCCCGAGCAGTGACGGCACTGTGGAAGTACGTGCCC
TGCTCACCTGGACCCTCAACCCACAGATCGACAACGAGGCCCTCTTCAGCTGCGAGGTCAAGCACCCAGC
TCTGTCGATGCCCATGCAGGCAGAGGTCACGCTGGTTGCCCCCAAAGGACCCAAAATTGTGATGACGCCC
AGCAGAGCCCGGGTAGGGGACACAGTGAGGATTCTGGTCCATGGGTTTCAGAACGAAGTCTTCCCGGAGC
CCATGTTCACGTGGACGCGGGTTGGGAGCCGCCTCCTGGACGGCAGCGCTGAGTTCGACGGGAAGGAGCT
GGTGCTGGAGCGGGTTCCCGCCGAGCTCAATGGCTCCATGTATCGCTGCACCGCCCAGAACCCACTGGGC
TCCACCGACACGCACACCCGGCTCATCGTGTTTGAAAACCCAAATATCCCAAGAGGAACGGAGGACTCTA
ATGGTTCCATTGGCCCCACTGGTGCCCGGCTCACCTTGGTGCTCGCCCTGACAGTGATTCTGGAGCTGAC
GTGA

Translation (467 aa):
MRTAPSLRRCVCLLLAAILDLARGYLTVNIEPLPPVVAGDAVTLKCNFKTDGRMREIVWYRVTDGGTIKQ
KIFTFDAMFSTNYSHMENYRKREDLVYQSTVRLPEVRISDNGPYECHVGIYDRATREKVVLASGNIFLNV
MAPPTSIEVVAADTPAPFSRYQAQNFTLVCIVSGGKPAPMVYFKRDGEPIDAVPLSEPPAASSGPLQDSR
PFRSLLHRDLDDTKMQKSLSLLDAENRGGRPYTERPSRGLTPDPNILLQPTTENIPETVVSREFPRWVHS
AEPTYFLRHSRTPSSDGTVEVRALLTWTLNPQIDNEALFSCEVKHPALSMPMQAEVTLVAPKGPKIVMTP
SRARVGDTVRILVHGFQNEVFPEPMFTWTRVGSRLLDGSAEFDGKELVLERVPAELNGSMYRCTAQNPLG
STDTHTRLIVFENPNIPRGTEDSNGSIGPTGARLTLVLALTVILELT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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