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Report for CCDS11267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11267.1 Public Homo sapiens 17 RAB11FIP4 24 110 108 CCDS HistoryNCBI Gene:84440Re-query CCDS DB by CCDS ID:11267.1Re-query CCDS DB by GeneID:84440See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11267.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621161.5 ENSP00000482620.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621161.5Link to Ensembl Protein Viewer:ENSP00000482620.1Re-query CCDS DB by Nucleotide ID:ENST00000621161Re-query CCDS DB by Protein ID:ENSP00000482620
Original member Current member NCBI NM_032932.6 NP_116321.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032932.6Link to Protein Sequence:NP_116321.2Re-query CCDS DB by Nucleotide ID:NM_032932Re-query CCDS DB by Protein ID:NP_116321Link to BLAST:NP_116321.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116321.2 637 Q86YS3-1 637 100% 0 0

Chromosomal Locations for CCDS 11267.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31391853 31392011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31431813 31431900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31434034 31434122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31517651 31517877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31521166 31521360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31521915 31522049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31522360 31522395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31523512 31523611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31523893 31523996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31525090 31525230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31527842 31527923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31528406 31528543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31528620 31528778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31530326 31530469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31531616 31531732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGGCGGGCGGCGCGGGCTGGTCGGGCGCCCCCGCGGCTCTGCTGCGCTCCGTGCGCCGCCTGCGCGAGG
TGTTCGAGGTGTGCGGCCGCGACCCCGACGGCTTCCTGCGCGTGGAGCGCGTCGCGGCGCTCGGACTGCG
CTTCGGCCAGGGCGAGGAGGTGGAAAAACTTGTGAAATATTTGGATCCCAACGACCTGGGGAGAATCAAC
TTCAAGGACTTTTGCCGGGGGGTGTTCGCCATGAAAGGGTGCGAGGAGCTGCTGAAGGATGTGCTGTCGG
TGGAGAGCGCGGGGACGCTGCCGTGCGCGCCAGAGATCCCAGACTGCGTGGAGCAGGGCAGCGAGGTCAC
AGGCCCCACCTTTGCTGATGGCGAGCTCATCCCCAGGGAACCCGGCTTTTTTCCCGAGGACGAGGAGGAG
GCTATGACGCTGGCGCCACCTGAGGGCCCCCAGGAGTTGTACACAGACAGCCCCATGGAGAGCACTCAGA
GCCTGGAGGGGTCTGTCGGGAGTCCTGCCGAGAAGGACGGGGGACTTGGGGGCCTGTTTCTGCCAGAAGA
CAAGTCCCTGGTCCACACTCCATCCATGACGACCTCAGACCTTTCTACACACTCCACCACCTCGCTCATC
AGCAATGAGGAGCAGTTTGAAGACTATGGGGAGGGTGACGATGTGGACTGTGCCCCCAGCAGCCCTTGCC
CCGATGATGAGACCAGGACCAACGTCTACTCGGACCTGGGGTCTTCGGTGTCTTCCAGTGCGGGGCAGAC
GCCTAGGAAAATGCGGCACGTGTACAACAGCGAATTGCTAGATGTTTACTGCTCTCAATGCTGCAAGAAA
ATCAACCTGCTCAATGACTTGGAAGCCCGACTGAAAAACCTGAAGGCCAACAGCCCCAACCGAAAGATCT
CCAGCACGGCCTTTGGACGGCAGCTCATGCACAGCAGCAACTTCAGCAGCAGCAATGGCAGCACCGAAGA
CCTGTTCCGGGACAGCATTGACTCTTGCGACAATGACATCACAGAGAAGGTAAGCTTCCTGGAAAAGAAG
GTGACAGAGCTGGAGAATGACAGCCTGACCAATGGGGACCTGAAGAGCAAGCTGAAGCAAGAGAACACAC
AGCTGGTGCACAGGGTGCATGAGCTGGAGGAGATGGTGAAGGATCAGGAGACCACGGCCGAGCAGGCTCT
GGAGGAGGAGGCGCGGCGCCACCGCGAGGCCTACGGCAAGCTGGAGAGGGAGAAGGCTACCGAGGTGGAG
CTGCTCAATGCCAGGGTGCAGCAGTTGGAGGAAGAAAATACAGAGCTTAGAACAACAGTGACTCGGCTCA
AGTCTCAAACAGAGAAACTGGATGAGGAGCGGCAGCGCATGTCTGACCGTCTGGAGGACACCAGCCTGCG
GCTCAAAGATGAGATGGACCTGTACAAGCGCATGATGGACAAGCTGCGACAGAACCGCCTTGAGTTCCAG
AAGGAGCGGGAGGCGACGCAGGAGCTCATCGAGGACTTGCGGAAGGAGCTGGAGCACCTGCAGATGTACA
AGCTGGACTGCGAGCGGCCAGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCAATGCCAGGGC
CCGCGAGGTGGAGCTCGAGCACGAGGTCAAGCGGCTCAAGCAGGAGAATTATAAGCTGCGGGATCAGAAC
GACGACTTGAATGGGCAGATTTTGAGCCTCAGCCTCTACGAAGCAAAAAACCTCTTTGCTGCCCAGACTA
AAGCCCAGTCTCTGGCTGCGGAGATAGACACCGCCTCGCGCGATGAGCTAATGGAAGCCCTGAAGGAGCA
GGAGGAGATCAACTTCCGGCTGAGGCAGTACATGGACAAGATTATCCTCGCCATCCTGGACCACAATCCC
TCCATCCTCGAGATCAAACACTAA

Translation (637 aa):
MAGGAGWSGAPAALLRSVRRLREVFEVCGRDPDGFLRVERVAALGLRFGQGEEVEKLVKYLDPNDLGRIN
FKDFCRGVFAMKGCEELLKDVLSVESAGTLPCAPEIPDCVEQGSEVTGPTFADGELIPREPGFFPEDEEE
AMTLAPPEGPQELYTDSPMESTQSLEGSVGSPAEKDGGLGGLFLPEDKSLVHTPSMTTSDLSTHSTTSLI
SNEEQFEDYGEGDDVDCAPSSPCPDDETRTNVYSDLGSSVSSSAGQTPRKMRHVYNSELLDVYCSQCCKK
INLLNDLEARLKNLKANSPNRKISSTAFGRQLMHSSNFSSSNGSTEDLFRDSIDSCDNDITEKVSFLEKK
VTELENDSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETTAEQALEEEARRHREAYGKLEREKATEVE
LLNARVQQLEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRLKDEMDLYKRMMDKLRQNRLEFQ
KEREATQELIEDLRKELEHLQMYKLDCERPGRGRSASSGLGEFNARAREVELEHEVKRLKQENYKLRDQN
DDLNGQILSLSLYEAKNLFAAQTKAQSLAAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNP
SILEIKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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