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Report for CCDS11027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11027.1 Public Homo sapiens 17 SPATA22 24 110 108 CCDS HistoryNCBI Gene:84690Re-query CCDS DB by CCDS ID:11027.1Re-query CCDS DB by GeneID:84690See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11027.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397168.7 ENSP00000380354.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397168.7Link to Ensembl Protein Viewer:ENSP00000380354.3Re-query CCDS DB by Nucleotide ID:ENST00000397168Re-query CCDS DB by Protein ID:ENSP00000380354
Original member Current member EBI ENST00000575375.5 ENSP00000459329.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000575375.5Link to Ensembl Protein Viewer:ENSP00000459329.1Re-query CCDS DB by Nucleotide ID:ENST00000575375Re-query CCDS DB by Protein ID:ENSP00000459329
Original member Current member EBI ENST00000573128.5 ENSP00000459580.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000573128.5Link to Ensembl Protein Viewer:ENSP00000459580.1Re-query CCDS DB by Nucleotide ID:ENST00000573128Re-query CCDS DB by Protein ID:ENSP00000459580
Original member Current member EBI ENST00000572969.6 ENSP00000460187.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000572969.6Link to Ensembl Protein Viewer:ENSP00000460187.1Re-query CCDS DB by Nucleotide ID:ENST00000572969Re-query CCDS DB by Protein ID:ENSP00000460187
Original member Current member NCBI NM_001170695.2 NP_001164166.1 Accepted alive Link to Nucleotide Sequence:NM_001170695.2Link to Protein Sequence:NP_001164166.1Re-query CCDS DB by Nucleotide ID:NM_001170695Re-query CCDS DB by Protein ID:NP_001164166Link to BLAST:NP_001164166.1
Original member Current member NCBI NM_001170697.2 NP_001164168.1 Accepted alive Link to Nucleotide Sequence:NM_001170697.2Link to Protein Sequence:NP_001164168.1Re-query CCDS DB by Nucleotide ID:NM_001170697Re-query CCDS DB by Protein ID:NP_001164168Link to BLAST:NP_001164168.1
Original member Current member NCBI NM_001170698.2 NP_001164169.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001170698.2Link to Protein Sequence:NP_001164169.1Re-query CCDS DB by Nucleotide ID:NM_001170698Re-query CCDS DB by Protein ID:NP_001164169Link to BLAST:NP_001164169.1
Original member Current member NCBI NM_001321337.2 NP_001308266.1 Accepted alive Link to Nucleotide Sequence:NM_001321337.2Link to Protein Sequence:NP_001308266.1Re-query CCDS DB by Nucleotide ID:NM_001321337Re-query CCDS DB by Protein ID:NP_001308266Link to BLAST:NP_001308266.1
Original member Current member NCBI NM_032598.5 NP_115987.2 Accepted alive Link to Nucleotide Sequence:NM_032598.5Link to Protein Sequence:NP_115987.2Re-query CCDS DB by Nucleotide ID:NM_032598Re-query CCDS DB by Protein ID:NP_115987Link to BLAST:NP_115987.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164166.1 363 Q8NHS9-1 363 100% 0 0
NP_001164168.1 363 Q8NHS9-1 363 100% 0 0
NP_001164169.1 363 Q8NHS9-1 363 100% 0 0
NP_001308266.1 363 Q8NHS9-1 363 100% 0 0
NP_115987.2 363 Q8NHS9-1 363 100% 0 0

Chromosomal Locations for CCDS 11027.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3440147 3440338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3443174 3443271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3446472 3446601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3448807 3449149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3462483 3462578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3462707 3462767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3467426 3467554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3469283 3469325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGAAGCGAAGCCTAAATGAAAATTCAGCTCGAAGTACAGCAGGCTGTTTGCCTGTTCCGTTGTTCAATC
AGAAAAAGAGGAACAGACAGCCATTAACTTCTAATCCACTTAAAGATGATTCAGGTATCAGTACCCCTTC
TGACAATTATGATTTTCCTCCTCTACCTACAGATTGGGCCTGGGAAGCTGTGAATCCAGAGTTGGCTCCT
GTAATGAAAACAGTGGACACCGGGCAAATACCACATTCAGTTTCTCGTCCTCTGAGAAGTCAAGATTCTG
TCTTTAACTCTATTCAATCAAATACTGGAAGAAGCCAGGGTGGTTGGAGCTACAGAGATGGTAACAAAAA
TACCAGCTTGAAAACTTGGAATAAAAATGATTTTAAGCCTCAATGTAAACGAACAAACTTAGTGGCAAAT
GATGGAAAAAATTCTTGTCCAGTGAGTTCGGGAGCTCAACAACAAAAACAATTAAGAATACCTGAACCTC
CTAACTTATCTCGCAACAAAGAAACCGAGCTACTCAGACAAACACATTCATCAAAAATATCTGGCTGCAC
AATGAGAGGGCTAGACAAAAACAGTGCACTACAGACACTTAAGCCCAATTTTCAACAAAATCAATATAAG
AAACAAATGTTGGATGATATTCCAGAAGACAACACCCTGAAGGAAACCTCATTGTATCAGTTACAGTTTA
AGGAAAAAGCTAGTTCTTTAAGAATTATTTCTGCAGTTATTGAAAGCATGAAGTATTGGCGTGAACATGC
ACAGAAAACTGTACTTCTTTTTGAAGTATTAGCTGTTCTTGATTCAGCTGTTACACCTGGCCCATATTAT
TCGAAGACTTTTCTTATGAGGGATGGGAAAAATACTCTGCCTTGTGTCTTTTATGAAATCGATCGTGAAC
TTCCGAGACTGATTAGAGGCCGAGTTCATAGATGTGTTGGCAACTATGACCAGAAAAAGAACATTTTCCA
ATGTGTTTCTGTCAGACCGGCGTCTGTTTCTGAACAAAAAACTTTCCAGGCATTTGTCAAAATTGCAGAT
GTTGAGATGCAGTATTATATTAATGTGATGAATGAAACTTAA

Translation (363 aa):
MKRSLNENSARSTAGCLPVPLFNQKKRNRQPLTSNPLKDDSGISTPSDNYDFPPLPTDWAWEAVNPELAP
VMKTVDTGQIPHSVSRPLRSQDSVFNSIQSNTGRSQGGWSYRDGNKNTSLKTWNKNDFKPQCKRTNLVAN
DGKNSCPVSSGAQQQKQLRIPEPPNLSRNKETELLRQTHSSKISGCTMRGLDKNSALQTLKPNFQQNQYK
KQMLDDIPEDNTLKETSLYQLQFKEKASSLRIISAVIESMKYWREHAQKTVLLFEVLAVLDSAVTPGPYY
SKTFLMRDGKNTLPCVFYEIDRELPRLIRGRVHRCVGNYDQKKNIFQCVSVRPASVSEQKTFQAFVKIAD
VEMQYYINVMNET


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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