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Report for CCDS8052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8052.1 Public Homo sapiens 11 RCOR2 24 110 108 CCDS HistoryNCBI Gene:283248Re-query CCDS DB by CCDS ID:8052.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301459.5 ENSP00000301459.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301459.5Link to Ensembl Protein Viewer:ENSP00000301459.4Re-query CCDS DB by Nucleotide ID:ENST00000301459Re-query CCDS DB by Protein ID:ENSP00000301459
Original member Current member NCBI NM_173587.4 NP_775858.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173587.4Link to Protein Sequence:NP_775858.2Re-query CCDS DB by Nucleotide ID:NM_173587Re-query CCDS DB by Protein ID:NP_775858Link to BLAST:NP_775858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775858.2 523 Q8IZ40 523 100% 0 0

Chromosomal Locations for CCDS 8052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63911865 63912179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63912305 63912534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63912676 63912733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63912870 63912947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63913954 63914169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63914261 63914330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63914417 63914541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63914655 63914816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63914902 63914954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63915178 63915258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63915555 63915611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63916330 63916456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGCCCTCAGTGATGGAGAAGCCGAGCGCGGGCTCTGGGATCCTGTCCCGTAGCCGGGCCAAGACGGTGC
CCAACGGCGGACAGCCCCACTCGGAGGATGACAGCAGCGAGGAGGAGCACTCGCACGACAGCATGATCCG
CGTTGGAACCAATTACCAGGCCGTAATTCCGGAGTGCAAGCCTGAGAGCCCCGCACGCTACAGCAACAAG
GAGCTGAAGGGGATGCTGGTGTGGTCACCCAACCACTGTGTGTCAGATGCCAAGCTTGACAAGTACATTG
CGATGGCCAAGGAGAAGCATGGCTACAACATTGAGCAGGCGCTGGGCATGCTTCTGTGGCATAAGCACGA
TGTGGAGAAGTCGCTGGCCGACCTGGCCAACTTCACCCCATTCCCTGACGAGTGGACAGTAGAGGACAAG
GTGCTGTTTGAACAGGCCTTTGGCTTCCATGGCAAATGCTTCCAGCGGATCCAGCAGATGCTGCCTGACA
AGTTGATTCCCAGCCTGGTGAAATACTACTACTCTTGGAAGAAGACCCGCAGCCGAACTAGTGTGATGGA
CAGACAGGCCCGGCGGCTGGGGGGCCGCAAGGACAAAGAAGACAGTGATGAGCTCGAAGAGGGTCGAGGA
GGCGTGAGTGAGGGAGAGCCCGATCCTGCAGATCCCAAGAGAGAGCCTCTACCCTCTCGGCCCCTGAATG
CACGCCCAGGCCCTGGGAAAAAGGAGGTCCAGGTGTCTCAGTACCGCCACCATCCCTTGCGAACCCGGCG
TCGCCCACCCAAGGGCATGTACCTGAGCCCTGAAGGCCTCACGGCAGTGTCAGGAAGCCCGGACCTTGCC
AACCTCACGCTCCGAGGTCTTGACTCTCAGCTCATCTCCCTCAAGCGCCAGGTACAGAGCATGAAGCAGA
CGAACAGCAGCCTGCGCCAAGCCCTGGAGGGCGGTATTGATCCACTACGCCCCCCGGAGGCCAACACCAA
GTTCAACTCCCGCTGGACCACAGATGAGCAGCTTTTGGCTGTTCAAGCCATCCGTAGGTATGGCAAAGAC
TTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAGGTGAAGACTTTCTTTGTGAGCTACC
GGCGCCGCTTCAATCTGGAGGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCTGGAGCCCC
AGTCCCCATGGAGGAGGCTAGGAGAGGGGCTCCATTGCCAGCCCCAGCCCTAGAGGAAGATGATGAGGTC
CAGATTACATCGGTCTCCACGTCCGTGCCCCGATCAGTGCCCCCTGCGCCACCACCCCCTCCACCTCCCA
CCTCGCTGTCCCAGCCACCCCCGCTGCTGAGGCCACCTTTGCCCACGGCTCCCACTCTGCTCCGACAGCC
ACCCCCACTGCAGCAGGGCCGCTTCCTCCAGCCCCGGCTGGCCCCCAACCAGCCCCCACCGCCTCTCATC
CGCCCCGCTCTGGCTGCCCCCCGCCACAGCGCCCGCCCTGGCCCTCAGCCCCCACCCACCCTGATTGGAA
CCCCTCTGGAGCCCCCAGCACCCTCACTCTGA

Translation (523 aa):
MPSVMEKPSAGSGILSRSRAKTVPNGGQPHSEDDSSEEEHSHDSMIRVGTNYQAVIPECKPESPARYSNK
ELKGMLVWSPNHCVSDAKLDKYIAMAKEKHGYNIEQALGMLLWHKHDVEKSLADLANFTPFPDEWTVEDK
VLFEQAFGFHGKCFQRIQQMLPDKLIPSLVKYYYSWKKTRSRTSVMDRQARRLGGRKDKEDSDELEEGRG
GVSEGEPDPADPKREPLPSRPLNARPGPGKKEVQVSQYRHHPLRTRRRPPKGMYLSPEGLTAVSGSPDLA
NLTLRGLDSQLISLKRQVQSMKQTNSSLRQALEGGIDPLRPPEANTKFNSRWTTDEQLLAVQAIRRYGKD
FGAIAEVIGNKTLTQVKTFFVSYRRRFNLEEVLQEWEAEQDGAPGAPVPMEEARRGAPLPAPALEEDDEV
QITSVSTSVPRSVPPAPPPPPPPTSLSQPPPLLRPPLPTAPTLLRQPPPLQQGRFLQPRLAPNQPPPPLI
RPALAAPRHSARPGPQPPPTLIGTPLEPPAPSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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