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Report for CCDS31945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31945.1 Public Homo sapiens 13 IFT88 24 110 108 CCDS HistoryNCBI Gene:8100Re-query CCDS DB by CCDS ID:31945.1Re-query CCDS DB by GeneID:8100See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31945.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351808.10 ENSP00000261632.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000351808.10Link to Ensembl Protein Viewer:ENSP00000261632.5Re-query CCDS DB by Nucleotide ID:ENST00000351808Re-query CCDS DB by Protein ID:ENSP00000261632
Original member Current member NCBI NM_001353568.2 NP_001340497.1 Accepted alive Link to Nucleotide Sequence:NM_001353568.2Link to Protein Sequence:NP_001340497.1Re-query CCDS DB by Nucleotide ID:NM_001353568Re-query CCDS DB by Protein ID:NP_001340497Link to BLAST:NP_001340497.1
Original member Current member NCBI NM_006531.5 NP_006522.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006531.5Link to Protein Sequence:NP_006522.2Re-query CCDS DB by Nucleotide ID:NM_006531Re-query CCDS DB by Protein ID:NP_006522Link to BLAST:NP_006522.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340497.1 824 Q13099-2 824 100% 0 0
NP_006522.2 824 Q13099-2 824 100% 0 0

Chromosomal Locations for CCDS 31945.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 20574386 20574475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20582957 20583019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20589811 20589867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20590967 20591020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20591618 20591681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20592335 20592404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20596150 20596240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20597015 20597119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20598651 20598753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20599451 20599565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20601705 20601933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20605035 20605105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20615793 20615879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20625750 20625849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20631016 20631102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20638332 20638518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20641290 20641398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20643455 20643605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20644843 20644958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20653876 20653928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20656365 20656430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20663498 20663604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20670973 20671039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20690705 20690815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20691054 20691175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGATGCAAAATGTGCACCTGGCTCCAGAGACAGATGAAGATGATCTTTATTCCGGCTATAATGACTACA
ATCCAATCTATGATATCGAGGAATTGGAGAATGATGCAGCTTTTCAGCAAGCTGTGAGGACTAGTCATGG
CAGAAGACCTCCAATAACTGCTAAAATATCAAGCACGGCAGTTACTAGACCTATAGCTACTGGATATGGG
TCCAAGACATCTCTGGCATCATCAATAGGAAGACCAATGACAGGGGCTATTCAGGATGGAGTTACTAGAC
CCATGACAGCAGTGAGAGCAGCTGGTTTTACCAAAGCAGCTTTGAGAGGCTCTGCATTTGACCCCCTTAG
TCAGTCAAGGGGCCCTGCTTCCCCTTTGGAAGCCAAGAAAAAAGATAGCCCAGAGGAAAAAATAAAGCAA
TTAGAGAAGGAAGTAAATGAGTTGGTAGAAGAAAGCTGTATTGCCAATAGTTGTGGAGACTTAAAATTGG
CCTTAGAAAAGGCAAAAGATGCAGGAAGAAAAGAGAGAGTCCTGGTGAGACAGCGAGAACAAGTTACAAC
TCCAGAAAATATCAATTTGGATTTAACTTACTCAGTTCTTTTCAATTTGGCCAGTCAGTATTCAGTTAAT
GAAATGTATGCCGAAGCACTTAACACTTATCAAGTTATAGTCAAAAATAAGATGTTTAGCAATGCAGGAA
TATTGAAAATGAATATGGGAAATATCTATTTAAAGCAAAGAAATTATTCCAAAGCCATTAAATTCTACCG
AATGGCATTAGACCAAGTTCCAAGTGTCAATAAGCAAATGAGGATTAAAATAATGCAGAATATTGGAGTT
ACATTTATTCAGGCTGGTCAGTATTCAGATGCTATTAATTCATATGAGCACATAATGAGCATGGCACCAA
ATCTGAAGGCAGGCTACAACCTAACTATCTGTTATTTTGCTATTGGAGACCGAGAAAAAATGAAGAAGGC
ATTCCAAAAATTGATTACTGTTCCATTAGAAATTGATGAAGATAAATATATTTCACCAAGTGATGATCCT
CATACTAACTTAGTAACTGAAGCTATAAAAAATGATCACCTCAGGCAAATGGAACGTGAAAGGAAAGCCA
TGGCAGAAAAATATATTATGACATCTGCAAAACTCATTGCTCCTGTAATTGAAACATCTTTTGCTGCAGG
TTATGATTGGTGCGTGGAAGTGGTGAAAGCTTCTCAATATGTAGAGCTAGCCAATGATCTGGAAATAAAC
AAAGCAGTTACATACTTGAGACAAAAAGACTATAACCAAGCTGTAGAGATCTTAAAAGTGTTGGAAAAAA
AGGACAGTAGAGTGAAAAGTGCAGCTGCAACCAATCTCTCAGCCCTGTATTATATGGGAAAGGATTTTGC
ACAAGCCAGCAGCTATGCAGATATAGCTGTGAACTCTGATAGATATAATCCAGCAGCTCTTACTAATAAA
GGGAATACAGTTTTTGCAAATGGTGATTATGAGAAGGCCGCTGAATTCTATAAAGAGGCTCTAAGAAATG
ATTCTTCTTGTACTGAAGCACTTTATAATATTGGCCTTACCTATGAGAAACTAAATCGGCTAGATGAGGC
TTTGGACTGTTTCCTGAAACTTCACGCAATCCTACGAAACAGTGCCGAAGTTCTTTACCAGATAGCAAAT
ATATATGAATTAATGGAAAATCCCAGTCAAGCTATTGAATGGCTAATGCAGGTGGTCAGTGTTATTCCAA
CCGATCCTCAAGTTTTATCTAAGCTAGGAGAATTATATGATCGTGAAGGAGATAAATCTCAAGCATTTCA
ATATTACTATGAGTCATATAGGTATTTTCCTTGTAATATTGAAGTCATTGAGTGGCTTGGAGCCTATTAC
ATTGACACCCAATTTTGGGAAAAAGCTATTCAGTACTTTGAAAGAGCTTCTCTTATACAGCCTACACAAG
TGAAATGGCAGCTGATGGTAGCTAGTTGTTTCAGAAGAAGTGGTAACTACCAAAAAGCATTAGATACTTA
CAAAGATACTCACAGAAAATTTCCAGAAAATGTCGAATGTCTGCGTTTCTTAGTTCGTCTCTGCACAGAT
CTTGGATTAAAAGATGCTCAAGAATATGCCAGAAAACTGAAGAGGTTGGAAAAAATGAAAGAAATAAGGG
AACAGCGCATAAAGTCAGGCAGAGATGGCAGTGGGGGCTCCCGTGGCAAAAGAGAAGGAAGTGCTAGCGG
TGATAGTGGCCAGAACTATAGTGCCAGTAGTAAAGGTGAACGACTAAGTGCCAGACTCAGAGCTTTACCT
GGGACAAATGAACCTTATGAAAGTAGCAGTAACAAAGAAATAGATGCCTCCTATGTGGACCCACTTGGCC
CTCAAATAGAACGACCAAAAACTGCAGCCAAGAAAAGGATCGATGAGGATGATTTTGCTGATGAAGAATT
AGGAGATGATTTGCTTCCAGAATAA

Translation (824 aa):
MMQNVHLAPETDEDDLYSGYNDYNPIYDIEELENDAAFQQAVRTSHGRRPPITAKISSTAVTRPIATGYG
SKTSLASSIGRPMTGAIQDGVTRPMTAVRAAGFTKAALRGSAFDPLSQSRGPASPLEAKKKDSPEEKIKQ
LEKEVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQVTTPENINLDLTYSVLFNLASQYSVN
EMYAEALNTYQVIVKNKMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQVPSVNKQMRIKIMQNIGV
TFIQAGQYSDAINSYEHIMSMAPNLKAGYNLTICYFAIGDREKMKKAFQKLITVPLEIDEDKYISPSDDP
HTNLVTEAIKNDHLRQMERERKAMAEKYIMTSAKLIAPVIETSFAAGYDWCVEVVKASQYVELANDLEIN
KAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNK
GNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEVLYQIAN
IYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYY
IDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLCTD
LGLKDAQEYARKLKRLEKMKEIREQRIKSGRDGSGGSRGKREGSASGDSGQNYSASSKGERLSARLRALP
GTNEPYESSSNKEIDASYVDPLGPQIERPKTAAKKRIDEDDFADEELGDDLLPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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