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Report for CCDS41883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41883.1 Public Homo sapiens 13 SIAH3 24 110 108 CCDS HistoryNCBI Gene:283514Re-query CCDS DB by CCDS ID:41883.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41883.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400405.4 ENSP00000383256.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400405.4Link to Ensembl Protein Viewer:ENSP00000383256.2Re-query CCDS DB by Nucleotide ID:ENST00000400405Re-query CCDS DB by Protein ID:ENSP00000383256
Original member Current member NCBI NM_198849.3 NP_942146.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198849.3Link to Protein Sequence:NP_942146.2Re-query CCDS DB by Nucleotide ID:NM_198849Re-query CCDS DB by Protein ID:NP_942146Link to BLAST:NP_942146.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942146.2 269 Q8IW03 269 100% 0 0

Chromosomal Locations for CCDS 41883.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 45783383 45784057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45851495 45851629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGCTTTTCTTTACCCAGTGCTTTGGGGCTGTATTAGATCTCATTCATCTCCGGTTTCAGCACTACAAGG
CTAAACGGGTTTTCTCCGCTGCCGGGCAACTTGTCTGTGTCGTCAACCCCACACACAACCTAAAGTATGT
GTCCAGTCGGCGCGCCGTCACTCAGAGCGCTCCAGAGCAAGGCAGCTTCCACCCTCACCATCTCTCCCAC
CACCACTGCCACCACCGCCACCACCACCACCTCCGCCACCACGCCCACCCCCACCACCTTCACCACCAGG
AGGCGGGGCTGCACGCCAACCCGGTGACGCCCTGCCTGTGCATGTGTCCCTTGTTCTCCTGCCAGTGGGA
AGGCCGCCTGGAGGTGGTGGTGCCCCACCTGCGGCAGATCCATAGGGTTGACATCCTCCAGGGAGCCGAG
ATCGTCTTCCTGGCCACGGACATGCACCTCCCCGCGCCGGCTGATTGGATCATCATGCACTCCTGCCTTG
GCCACCACTTTCTGTTGGTGCTGAGGAAACAGGAGAGGCATGAAGGGCACCCCCAGTTCTTTGCCACCAT
GATGCTGATTGGGACCCCCACCCAGGCCGACTGCTTCACCTATCGCCTGGAGCTCAACAGAAACCATCGG
CGCCTCAAGTGGGAGGCCACGCCCCGGTCTGTTCTTGAGTGCGTGGACTCGGTGATTACGGACGGGGACT
GCCTCGTCCTCAACACCTCGCTGGCACAGCTCTTCTCTGACAACGGCAGCCTTGCCATTGGGATTGCCAT
CACCGCGACAGAGGTCCTCCCCTCAGAAGCTGAAATGTGA

Translation (269 aa):
MLFFTQCFGAVLDLIHLRFQHYKAKRVFSAAGQLVCVVNPTHNLKYVSSRRAVTQSAPEQGSFHPHHLSH
HHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCPLFSCQWEGRLEVVVPHLRQIHRVDILQGAE
IVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQERHEGHPQFFATMMLIGTPTQADCFTYRLELNRNHR
RLKWEATPRSVLECVDSVITDGDCLVLNTSLAQLFSDNGSLAIGIAITATEVLPSEAEM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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