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Report for CCDS14131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14131.1 Public Homo sapiens X FAM9A 24 110 108 CCDS HistoryNCBI Gene:171482Re-query CCDS DB by CCDS ID:14131.1Re-query CCDS DB by GeneID:171482See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14131.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381003.7 ENSP00000370391.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381003.7Link to Ensembl Protein Viewer:ENSP00000370391.3Re-query CCDS DB by Nucleotide ID:ENST00000381003Re-query CCDS DB by Protein ID:ENSP00000370391
Original member Current member EBI ENST00000543214.1 ENSP00000440163.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543214.1Link to Ensembl Protein Viewer:ENSP00000440163.1Re-query CCDS DB by Nucleotide ID:ENST00000543214Re-query CCDS DB by Protein ID:ENSP00000440163
Original member Current member NCBI NM_001171186.1 NP_001164657.1 Accepted alive Link to Nucleotide Sequence:NM_001171186.1Link to Protein Sequence:NP_001164657.1Re-query CCDS DB by Nucleotide ID:NM_001171186Re-query CCDS DB by Protein ID:NP_001164657Link to BLAST:NP_001164657.1
Original member Current member NCBI NM_174951.3 NP_777611.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174951.3Link to Protein Sequence:NP_777611.1Re-query CCDS DB by Nucleotide ID:NM_174951Re-query CCDS DB by Protein ID:NP_777611Link to BLAST:NP_777611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164657.1 332 Q8IZU1 332 100% 0 0
NP_777611.1 332 Q8IZU1 332 100% 0 0

Chromosomal Locations for CCDS 14131.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8791311 8791379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8793658 8793756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8795078 8795420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8796268 8796382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8798150 8798181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8798359 8798479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8798966 8799094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8800081 8800171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGAGCCCGTGGGCAGGAAGCGCAGCAGGAAGGCTGCCAAAGCTCAGTTGGAAGCTCAAGTTACGGCCG
CCCAGGGGGCCACGAAAGAAGGTTCAGGGATCGCCTCTAACTTCCCAGGACAGCCAACCATGGAGCCCGT
GGGCAGGAAGCGCAGCAGGAAGGCTGCCAAAGCTCAGTTGGAAGCTCAAGTTAGGGCCGCCCCGGCGAAG
AAGCACACAGGAAAGGATCCAGTCCGTGATGAATGTGAGGAAAGAAACCCTTTTACAGAAACAAGGGAGG
AAGATGTAACTGATGAGCATGGGGAAAGAGAACCTTTTGCTGAAAAAGATGAACACACGGGGATTCATAC
CATGAAGCTAGAACATATTGCAGCTGACATTAAAAAGGGCCTTGCTGCAAAAAGAGAAATGATAAAAATA
GATAAAGCAGCTTACAGGAAAACCAAGAACACAATTGAACGTGCTTTGAAAAAAAAACAACTAAAAAGGC
AGAAACGTGATTATAGACATACTCGGAAGTTGCTGAATGTCCTTAAAGAATACATCGCAGAGAAGCAGAA
AGATGATGAAGCAGAAGAAGCAGAAGCCGCAGCAGCAGCAGCAGAAGCCGCAGCAGCAGCAGAAGCCGCA
GCAGCAGCAGCAGAAGTAATAGTAGTAGAAGACGAAGAGGAGGAAGAGAAGGAGGAGGAGGAGGAGAAAG
AAGAGGAGGAAGAAGAAGGAGAAGAAGAAGGAGGAGGAGAAGAAGGAGAAGAAGGAGGAGGAGGAGGAGA
AGGAGAAGAAACAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGAGGAAGAACAAATTAAAGCATTT
CAAGAAAAACAGAAGAGGTGGCAACAACCTACAGGTGTTAGGAGCTGGAGGCTGAGAGAGATGAAGCCGC
TACTTGAGCAATTACTAAAGGCTGCCAAGGACACTAAAGACAATTATTGCATCATTTCTTCCAGTGAAGA
AAGTGAACTTGATAACTAG

Translation (332 aa):
MEPVGRKRSRKAAKAQLEAQVTAAQGATKEGSGIASNFPGQPTMEPVGRKRSRKAAKAQLEAQVRAAPAK
KHTGKDPVRDECEERNPFTETREEDVTDEHGEREPFAEKDEHTGIHTMKLEHIAADIKKGLAAKREMIKI
DKAAYRKTKNTIERALKKKQLKRQKRDYRHTRKLLNVLKEYIAEKQKDDEAEEAEAAAAAAEAAAAAEAA
AAAAEVIVVEDEEEEEKEEEEEKEEEEEEGEEEGGGEEGEEGGGGGEGEETEEEEEEEEEEEEEEQIKAF
QEKQKRWQQPTGVRSWRLREMKPLLEQLLKAAKDTKDNYCIISSSEESELDN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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