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Report for CCDS9491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9491.1 Public Homo sapiens 13 GPR18 24 110 108 CCDS HistoryNCBI Gene:2841Re-query CCDS DB by CCDS ID:9491.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9491.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340807.3 ENSP00000343428.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340807.3Link to Ensembl Protein Viewer:ENSP00000343428.3Re-query CCDS DB by Nucleotide ID:ENST00000340807Re-query CCDS DB by Protein ID:ENSP00000343428
Original member Current member EBI ENST00000397470.5 ENSP00000380610.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397470.5Link to Ensembl Protein Viewer:ENSP00000380610.2Re-query CCDS DB by Nucleotide ID:ENST00000397470Re-query CCDS DB by Protein ID:ENSP00000380610
Original member Current member EBI ENST00000397473.7 ENSP00000380613.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397473.7Link to Ensembl Protein Viewer:ENSP00000380613.2Re-query CCDS DB by Nucleotide ID:ENST00000397473Re-query CCDS DB by Protein ID:ENSP00000380613
Original member Current member EBI ENST00000416594.2 ENSP00000401611.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416594.2Link to Ensembl Protein Viewer:ENSP00000401611.2Re-query CCDS DB by Nucleotide ID:ENST00000416594Re-query CCDS DB by Protein ID:ENSP00000401611
Original member Current member NCBI NM_001098200.2 NP_001091670.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098200.2Link to Protein Sequence:NP_001091670.1Re-query CCDS DB by Nucleotide ID:NM_001098200Re-query CCDS DB by Protein ID:NP_001091670Link to BLAST:NP_001091670.1
Original member Current member NCBI NM_005292.4 NP_005283.1 Accepted alive Link to Nucleotide Sequence:NM_005292.4Link to Protein Sequence:NP_005283.1Re-query CCDS DB by Nucleotide ID:NM_005292Re-query CCDS DB by Protein ID:NP_005283Link to BLAST:NP_005283.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091670.1 331 Q14330 331 100% 0 0
NP_005283.1 331 Q14330 331 100% 0 0

Chromosomal Locations for CCDS 9491.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 99254877 99255872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGATCACCCTGAACAATCAAGATCAACCTGTCCCTTTTAACAGCTCACATCCAGATGAATACAAAATTG
CAGCCCTTGTCTTCTATAGCTGTATCTTCATAATTGGATTATTTGTTAACATCACTGCATTATGGGTTTT
CAGTTGTACCACCAAGAAGAGAACCACGGTAACCATCTATATGATGAATGTGGCATTAGTGGACTTGATA
TTTATAATGACTTTACCCTTTCGAATGTTTTATTATGCAAAAGATGAATGGCCATTTGGAGAGTACTTCT
GCCAGATTCTTGGAGCTCTCACAGTGTTTTACCCAAGCATTGCTTTATGGCTTCTTGCCTTTATTAGTGC
TGACAGATACATGGCCATTGTACAGCCGAAGTACGCCAAAGAACTTAAAAACACGTGCAAAGCCGTGCTG
GCGTGTGTGGGAGTCTGGATAATGACCCTGACCACGACCACCCCTCTGCTACTGCTCTATAAAGACCCAG
ATAAAGACTCCACTCCCGCCACCTGCCTCAAGATTTCTGACATCATCTATCTAAAAGCTGTGAACGTGCT
GAACCTCACTCGACTGACATTTTTTTTCTTGATTCCTTTGTTCATCATGATTGGGTGCTACTTGGTCATT
ATTCATAATCTCCTTCACGGCAGGACGTCTAAGCTGAAACCCAAAGTCAAGGAGAAGTCCATAAGGATCA
TCATCACGCTGCTGGTGCAGGTGCTCGTCTGCTTTATGCCCTTCCACATCTGTTTCGCTTTCCTGATGCT
GGGAACGGGGGAGAACAGTTACAATCCCTGGGGAGCCTTTACCACCTTCCTCATGAACCTCAGCACGTGT
CTGGATGTGATTCTCTACTACATCGTTTCAAAACAATTTCAGGCTCGAGTCATTAGTGTCATGCTATACC
GTAATTACCTTCGAAGCATGCGCAGAAAAAGTTTCCGATCTGGTAGTCTACGGTCACTAAGCAATATAAA
CAGTGAAATGTTATGA

Translation (331 aa):
MITLNNQDQPVPFNSSHPDEYKIAALVFYSCIFIIGLFVNITALWVFSCTTKKRTTVTIYMMNVALVDLI
FIMTLPFRMFYYAKDEWPFGEYFCQILGALTVFYPSIALWLLAFISADRYMAIVQPKYAKELKNTCKAVL
ACVGVWIMTLTTTTPLLLLYKDPDKDSTPATCLKISDIIYLKAVNVLNLTRLTFFFLIPLFIMIGCYLVI
IHNLLHGRTSKLKPKVKEKSIRIIITLLVQVLVCFMPFHICFAFLMLGTGENSYNPWGAFTTFLMNLSTC
LDVILYYIVSKQFQARVISVMLYRNYLRSMRRKSFRSGSLRSLSNINSEML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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