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Report for CCDS12564.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12564.2 Public Homo sapiens 19 ACTMAP 24 110 108 CCDS HistoryNCBI Gene:284325Re-query CCDS DB by CCDS ID:12564.2See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12564.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378313.7 ENSP00000367564.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378313.7Link to Ensembl Protein Viewer:ENSP00000367564.2Re-query CCDS DB by Nucleotide ID:ENST00000378313Re-query CCDS DB by Protein ID:ENSP00000367564
Original member Current member NCBI NM_198476.5 NP_940878.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198476.5Link to Protein Sequence:NP_940878.3Re-query CCDS DB by Nucleotide ID:NM_198476Re-query CCDS DB by Protein ID:NP_940878Link to BLAST:NP_940878.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940878.3 351 Q5BKX5-1 351 100% 0 0

Chromosomal Locations for CCDS 12564.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40742433 40742770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40743905 40743975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40744067 40744196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40744559 40744683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40745130 40745198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40749481 40749803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGACTTCTCCATGCTCTCCTCCCCTAAAACCACCAATTTCTCCTCCAAAAACCCCTGTACCCCAAGCCA
GCAGCATTCCATCTCCTCCTCTACCCCCAAGTCCCCTGGACTTTTCAGCTTTACCATCCCCTCCCTGGAG
TCAGCAGACCCCTGTTCCCCCACCGCTCCCACTGCCTCCTCCACCCGCTGCCACAGGGCCTGCTCCCCGT
CATGTCTTCGGCCTGGAGAAGAGCCAGCTCCTGAAGGAGGCCTTTGATAAGGCCGGCCCGGTCCCCAAGG
GCAGAGAAGATGTGAAGAGGCTTCTGAAACTACACAAGGACCGGTTCCGAGGTGACCTGCGGTGGATCCT
CTTCTGTGCAGACCTGCCGTCCCTCATCCAAGAAGGCCCTCAATGCGGGCTGGTGGCCTTGTGGATGGCA
GGTACTCTCCTGTCGCCCCCCAGTGGCGTCCCCCTGGAGAGACTCATACGGGTGGCCACGGAAAGAGGCT
ACACGGCCCAGGGAGAGATGTTCTCAGTGGCCGATATGGGCAGGCTGGCCCAGGAGGTGCTGGGCTGCCA
GGCCAAGCTGCTCTCTGGTGGCCTGGGCGGTCCCAACAGAGACCTCGTCCTGCAGCACCTGGTCACTGGA
CATCCCCTGCTCATCCCCTACGACGAGGACTTCAACCATGAGCCGTGTCAGAGGAAGGGCCACAAGGCAC
ACTGGGCGGTGAGTGCAGGGGTCCTGCTGGGTGTTCGGGCTGTGCCCAGTCTCGGCTACACTGAGGACCC
TGAGCTGCCGGGCCTGTTCCACCCAGTGCTGGGCACGCCCTGCCAACCACCATCCCTGCCAGAGGAGGGC
TCCCCGGGAGCTGTCTACCTGCTGTCCAAGCAGGGCAAGAGTTGGCACTATCAGCTGTGGGACTACGACC
AGGTCCGGGAGAGCAACCTGCAGCTGACGGACTTCTCGCCCTCACGGGCCACTGACGGCCGGGTGTACGT
GGTGCCCGTGGGTGGGGTACGGGCTGGCCTCTGTGGCCAGGCCCTGCTCCTCACACCACAGGACTGCAGC
CATTAG

Translation (351 aa):
MTSPCSPPLKPPISPPKTPVPQASSIPSPPLPPSPLDFSALPSPPWSQQTPVPPPLPLPPPPAATGPAPR
HVFGLEKSQLLKEAFDKAGPVPKGREDVKRLLKLHKDRFRGDLRWILFCADLPSLIQEGPQCGLVALWMA
GTLLSPPSGVPLERLIRVATERGYTAQGEMFSVADMGRLAQEVLGCQAKLLSGGLGGPNRDLVLQHLVTG
HPLLIPYDEDFNHEPCQRKGHKAHWAVSAGVLLGVRAVPSLGYTEDPELPGLFHPVLGTPCQPPSLPEEG
SPGAVYLLSKQGKSWHYQLWDYDQVRESNLQLTDFSPSRATDGRVYVVPVGGVRAGLCGQALLLTPQDCS
H


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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