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Report for CCDS46555.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46555.2 Public Homo sapiens 2 KLHL30 24 110 108 CCDS HistoryNCBI Gene:377007Re-query CCDS DB by CCDS ID:46555.2Re-query CCDS DB by GeneID:377007See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 46555.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46555.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409223.2 ENSP00000386389.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409223.2Link to Ensembl Protein Viewer:ENSP00000386389.1Re-query CCDS DB by Nucleotide ID:ENST00000409223Re-query CCDS DB by Protein ID:ENSP00000386389
Original member Current member NCBI NM_198582.4 NP_940984.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198582.4Link to Protein Sequence:NP_940984.3Re-query CCDS DB by Nucleotide ID:NM_198582Re-query CCDS DB by Protein ID:NP_940984Link to BLAST:NP_940984.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940984.3 578 Q0D2K2 578 100% 0 0

Chromosomal Locations for CCDS 46555.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 238140755 238141528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238142799 238142931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238144902 238144988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238145677 238145832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238147834 238148022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238149007 238149152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 238150814 238151065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGTGCGGAACGTGGATGACCTGGATTTCCACCTGCCCTCGCATGCCCAGGACATGCTGGATGGCCTGC
AGCGCCTGCGCTCTCAGCCCAAGCTGGCCGACGTCACACTGCTGGTGGGCGGCCGGGAGCTGCCATGCCA
CCGCGGCCTCCTGGCGCTCAGCAGCCCCTACTTCCATGCCATGTTTGCGGGTGACTTCGCCGAGAGCTTC
TCTGCGCGCGTGGAGCTGCGGGACGTGGAGCCCGCCGTGGTGGGACAACTGGTGGACTTCGTGTACACAG
GCCGGCTGACCATCACGCAGGGCAACGTGGAGGCGCTGACACGCACGGCTGCGCGCCTGCACTTCCCCTC
GGTGCAGAAGGTCTGCGGCCGCTACCTGCAGCAGCAACTGGATGCCGCCAACTGCCTGGGCATCTGTGAG
TTCGGGGAGCAGCAAGGGCTGCTGGGCGTGGCTGCCAAGGCCTGGGCCTTCCTGCGAGAGAACTTTGAGG
CTGTGGCACGTGAGGACGAGTTCCTGCAGCTTCCCCGAGAGCGGCTGGTCACTTGTCTGGCCGGCGACCT
GCTGCAGGTACAGCCGGAGCAAAGCCGACTCGAGGCCCTGATGCGCTGGGTGCGCCATGACCCGCAGGCC
CGGGCCGCCCACCTGCCCGAGCTGCTCAGCCTAGTGCACCTGGACGCCGTGCCCAGGCCCTGCGTGCAGC
AACTGCTGGCCTCAGAGCCCCTGATCCAGGAGTCAGAGGCATGCCGGGCAGCCCTGTCCCAGGGCCATGA
TGGGGCACCACTCGCCCTCCAGCAGAAGCTGGAGGAGGTCCTGGTGGTGGTGGGCGGGCAGGCGCTGGAG
GAGGAGGAGGCAGGTGAGGAGCCCACCCCCGGCCTTGGGAACTTTGCCTTCTACAACAGCAAGGCCAAGA
GGTGGATGGCACTTCCAGACTTCCCCGACTATCACAAGTGGGGTTTCTCCCTGGCGGCCCTGAACAACAA
CATCTATGTCACAGGTGGCTCTCGGGGCACAAAGACAGACACCTGGTCAACCACCCAGGCCTGGTGCTTC
CCCCTGAAGGAGGCCTCCTGGAAGCCCGTGGCGCCCATGCTGAAGCCCCGCACCAACCACGCCAGCGCGG
CCCTCAATGGGGAGATCTACGTTATCGGCGGCACCACCCTGGACGTGGTGGAGGTGGAGAGCTATGACCC
CTACACGGACAGCTGGACGCCCGTCAGCCCGGCCCTCAAATACGTCAGCAACTTCTCGGCTGCCGGCTGC
CGGGGCCGGCTCTACCTGGTGGGCTCCAGCGCCTGCAAGTACAACGCCCTGGCCCTGCAGTGCTACAACC
CTGTCACAGATGCGTGGAGTGTGATCGCCTCGCCCTTCCTGCCCAAGTACCTGTCCTCGCCTCGCTGTGC
TGCACTGCACGGGGAGCTCTACCTCATTGGGGACAACACCAAGAAGGTCTACGTGTACGACCCCGGGGCC
AACCTGTGGCAGAAGGTGCAGTCACAGCACAGCCTGCATGAGAATGGCGCGCTGGTGCCACTGGGTGATG
CGCTGTACGTGACGGGCGGCCGCTGGCAGGGCATGGAAGGTGACTACCACGTGGAGATGGAGGCCTACGA
CACGGTTCGGGACACCTGGACCCGCCACGGCGCCCTGCCCCGGCTCTGGCTCTACCACGGGGCCTCCACC
GTCTTCCTGGATGTCTCCAAGTGGACCCAGCCCTCCGGCCCCACCCAGGAGCACTAA

Translation (578 aa):
MVRNVDDLDFHLPSHAQDMLDGLQRLRSQPKLADVTLLVGGRELPCHRGLLALSSPYFHAMFAGDFAESF
SARVELRDVEPAVVGQLVDFVYTGRLTITQGNVEALTRTAARLHFPSVQKVCGRYLQQQLDAANCLGICE
FGEQQGLLGVAAKAWAFLRENFEAVAREDEFLQLPRERLVTCLAGDLLQVQPEQSRLEALMRWVRHDPQA
RAAHLPELLSLVHLDAVPRPCVQQLLASEPLIQESEACRAALSQGHDGAPLALQQKLEEVLVVVGGQALE
EEEAGEEPTPGLGNFAFYNSKAKRWMALPDFPDYHKWGFSLAALNNNIYVTGGSRGTKTDTWSTTQAWCF
PLKEASWKPVAPMLKPRTNHASAALNGEIYVIGGTTLDVVEVESYDPYTDSWTPVSPALKYVSNFSAAGC
RGRLYLVGSSACKYNALALQCYNPVTDAWSVIASPFLPKYLSSPRCAALHGELYLIGDNTKKVYVYDPGA
NLWQKVQSQHSLHENGALVPLGDALYVTGGRWQGMEGDYHVEMEAYDTVRDTWTRHGALPRLWLYHGAST
VFLDVSKWTQPSGPTQEH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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