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Report for CCDS3972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3972.1 Public Homo sapiens 5 SETD9 24 110 108 CCDS HistoryNCBI Gene:133383Re-query CCDS DB by CCDS ID:3972.1Re-query CCDS DB by GeneID:133383See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3972.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285947.5 ENSP00000285947.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285947.5Link to Ensembl Protein Viewer:ENSP00000285947.2Re-query CCDS DB by Nucleotide ID:ENST00000285947Re-query CCDS DB by Protein ID:ENSP00000285947
Original member Current member NCBI NM_153706.4 NP_714917.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153706.4Link to Protein Sequence:NP_714917.2Re-query CCDS DB by Nucleotide ID:NM_153706Re-query CCDS DB by Protein ID:NP_714917Link to BLAST:NP_714917.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_714917.2 299 Q8NE22-1 299 100% 0 0

Chromosomal Locations for CCDS 3972.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 56909646 56909743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56911169 56911536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56913011 56913134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56913874 56913989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56914861 56914966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 56916815 56916902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGCCTGGCCGTCTGCTGCGGGGCCTGTGGCAGCGATGGCGCCGTTACAAGTACCGCTTCGTTCCCTGGA
TCGCACTGAACCTAAGCCACAACCCGAGGACCCTCCGATATGTTCCAGAGGAATCCAAAGACAAAGTTAT
CTCAGATGAAGATGTCCTAGGAACATTACTGAAAGTTTTCCAGGCTCTATTCTTAAATGATTTCAATAAA
CAATCAGAAATCTTGTCTATGCTTCCAGAATCTGTTAAATCAAAATATCAAGACCTACTGGCAGTTGAAC
ATCAAGGGGTGAAACTGCTTGAAAACAGACATCAACAGCAAAGTACCTTTAAACCAGAAGAAATTCTTTA
CAAGACTTTGGGTTTCAGTGTTGCCCAAGCAACTAGCTCATTGATTTCTGCTGGAAAAGGTGTCTTCGTT
ACTAAAGGATTGGTACCAAAAGGCGCAGTCGTATCTATGTATCCTGGTACAGTATATCAGAAGTATGAGC
CGATCTTTTTCCAGTCCATTGGAAATCCGTTTATTTTTAGATGCCTGGATGGGGTACTCATTGATGGGAA
TGACAAAGGGATATCAAAAGTTGTGTACAGATCTTGCAATGGGAGGGATCGACTCGGCCCTTTAAAAATG
AGTGATAGTACATGGCTAACGTCAGAAATTCATAACCCTCTGGCTGTGGGACAGTATGTCAACAATTGTT
CCAATGACAGAGCAGCTAATGTCTGTTATCAGGAATTTGATGTGCCTGCAGTTTTCCCTATAGAACTGAA
GCAGTATCTTCCAAACATTGCCTACAGCTATGACAAACAAAGCCCACTTCGATGTGTTGTTCTTGTCGCA
CTTAGGGACATCAATCAAGGAGAAGAGCTTTTTTCAAACTACTACACAATTGTCAGCTAA

Translation (299 aa):
MPGRLLRGLWQRWRRYKYRFVPWIALNLSHNPRTLRYVPEESKDKVISDEDVLGTLLKVFQALFLNDFNK
QSEILSMLPESVKSKYQDLLAVEHQGVKLLENRHQQQSTFKPEEILYKTLGFSVAQATSSLISAGKGVFV
TKGLVPKGAVVSMYPGTVYQKYEPIFFQSIGNPFIFRCLDGVLIDGNDKGISKVVYRSCNGRDRLGPLKM
SDSTWLTSEIHNPLAVGQYVNNCSNDRAANVCYQEFDVPAVFPIELKQYLPNIAYSYDKQSPLRCVVLVA
LRDINQGEELFSNYYTIVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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