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Report for CCDS47028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47028.1 Public Homo sapiens 4 FAM200B 24 110 108 CCDS HistoryNCBI Gene:285550Re-query CCDS DB by CCDS ID:47028.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422728.3 ENSP00000393017.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000422728.3Link to Ensembl Protein Viewer:ENSP00000393017.2Re-query CCDS DB by Nucleotide ID:ENST00000422728Re-query CCDS DB by Protein ID:ENSP00000393017
Original member Current member NCBI NM_001145191.2 NP_001138663.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145191.2Link to Protein Sequence:NP_001138663.1Re-query CCDS DB by Nucleotide ID:NM_001145191Re-query CCDS DB by Protein ID:NP_001138663Link to BLAST:NP_001138663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138663.1 657 P0CF97 657 100% 0 0

Chromosomal Locations for CCDS 47028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 15686978 15688951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGGATCATTTCTTTATTAAAAGAAAGAGGAATAGTGAAGTGAAATATACAGAAGCATGTTCAAGTTCAT
CT
GTTGAATCTGGAATTGTGAATAGTGACAATATTGAGAAAAATACTGACTCCAATCTGCAAACTTCAAC
T
TCATTTGAGCCACATTTCAAAAAGAAAAAAGTAAGTGCAAGACGTTATAATGAAGATTACTTAAAATAT
GGC
TTTATCAAATGTGAAAAACCCTTTGAAAATGACAGACCTCAGTGTGTTATTTGTAATAATATTCTTG
CG
AATGAAAGCTTAAAACCTTCGAAATTAAAAAGGCACTTAGAAACTCAGCATGCTGAACTTATTGATAA
G
CCTCTTGAATATTTTCAAAGAAAGAAAAAAGACATAAAGTTATCAACACAATTTCTTAGTTGTTCTACT
GCT
GTTAGTGAGAAAGCCTTATTATCATCATATTTAGTTGCATATCGTGTGGCAAAAGAGAAAATAGCTA
AC
ACAGCTGCTGAAAAAATTATTCTTCCAGCATGTTTGGATATGGTGCGTACAATATTTGATGATAAATC
A
GCTGATAAATTAAAAACTATACCTAATGATAACACAGTATCTCTTCGAATTTGTACTATTGCAGAACAT
TTA
GAAACAATGCTTATTACTCGTTTACAGTCTGGTATAGATTTTGCAATCCAGCTTGATGAAAGCACTG
AT
ATTGGAAGCTGCACAACACTTTTAGTTTATGTCAGATATGCGTGGCAAGATGATTTTTTGGAGGATTT
T
TTGTGTTTTTTAAATTTAACCTCACACCTAAGTGGATTAGATATTTTTACAGAATTAGAAAGGCGCATA
GTT
GGCCAATATAAATTAAACTGGAAAAACTGTAAAGGAATTACAAGTGATGGCACAGCAACCATGACTG
GA
AAACATAGCAGAGTAATTAAAAAATTACTAGAAGTTACTAATAATGGTGCTGTGTGGAATCATTGTTT
T
ATACATCGTGAAGGTTTAGCATCCAGAGAAATTCCACAGAATCTCATGGAGGTATTGAAAAATGCAGTG
AAA
GTTGTTAATTTTATTAAAGGAAGCTCATTGAATAGCCGGCTTCTTGAAACATTTTGTTCAGAGATTG
GA
ACTAATCATACCCACTTACTATATCATACCAAAATTCGTTGGTTGTCTCAAGGGAAAATACTAAGCAG
G
GTTTATGAGCTCAGGAATGAGATTCACTTTTTTCTCATTGAAAAAAAATCTCATTTGGCAAGTATTTTT
GAA
GATGATACTTGGGTAACAAAATTGGCATATTTAACTGATATTTTTAGCATTCTTAATGAACTGAGTT
TA
AAACTACAGGGGAAAAACAGTGATGTATTCCAACATGTTGAACGTATCCAGGGATTTCGAAAGACATT
A
TTGTTATGGCAAGTAAGACTTAAAAGTAATCGTCCTAGCTATTACATGTTTCCAAGATTTTTGCAGCAT
ATT
GAAGAGAATATTATTAATGAAAACATTTTGAAAGAAATAAAATTAGAGATATTGTTGCATCTCACTT
CT
CTGTCTCAAACTTTTAACCATTTCTTTCCAGAAGAAAAATTTGAAACATTAAGGGAAAACAGTTGGGT
A
AAAGATCCATTTGCTTTTCGACACCCTGAATCAATAATTGAGCTAAACTTGGTGCCTGAAGAAGAGAAT
GAA
TTATTGCAGCTTAGTTCTTCATATACATTGAAGAATGATTATGAAACCTTAAGTTTATCAGCATTTT
GG
ATGAAGGTAAAGGAAGACTTTCCATTGTTAAGTAGAAAGAGTGTCCTGCTATTGCTACCATTCACAAC
A
ACTAGTTTGTGTGAACTAGGGTTTTCCATCTTAACGCAGTTAAAAACAAAGGAAAGAAATGGGCTGAAT
TGT
GCAGCAGTTATGCGGGTAGCATTATCTTCCTGTGTTCCAGACTGGAATGAACTTATGAACAGGCAAG
CA
CACCCATCATAG


Translation (657 aa):
MDHFFIKRKRNSEVKYTEACSSSSVESGIVNSDNIEKNTDSNLQTSTSFEPHFKKKKVSARRYNEDYLKY
G
FIKCEKPFENDRPQCVICNNILANESLKPSKLKRHLETQHAELIDKPLEYFQRKKKDIKLSTQFLSCST
A
VSEKALLSSYLVAYRVAKEKIANTAAEKIILPACLDMVRTIFDDKSADKLKTIPNDNTVSLRICTIAEH
L
ETMLITRLQSGIDFAIQLDESTDIGSCTTLLVYVRYAWQDDFLEDFLCFLNLTSHLSGLDIFTELERRI
V
GQYKLNWKNCKGITSDGTATMTGKHSRVIKKLLEVTNNGAVWNHCFIHREGLASREIPQNLMEVLKNAV
K
VVNFIKGSSLNSRLLETFCSEIGTNHTHLLYHTKIRWLSQGKILSRVYELRNEIHFFLIEKKSHLASIF
E
DDTWVTKLAYLTDIFSILNELSLKLQGKNSDVFQHVERIQGFRKTLLLWQVRLKSNRPSYYMFPRFLQH
I
EENIINENILKEIKLEILLHLTSLSQTFNHFFPEEKFETLRENSWVKDPFAFRHPESIIELNLVPEEEN
E
LLQLSSSYTLKNDYETLSLSAFWMKVKEDFPLLSRKSVLLLLPFTTTSLCELGFSILTQLKTKERNGLN
C
AAVMRVALSSCVPDWNELMNRQAHPS




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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