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Report for CCDS3190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3190.1 Public Homo sapiens 3 TRIM59 24 110 108 CCDS HistoryNCBI Gene:286827Re-query CCDS DB by CCDS ID:3190.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309784.9 ENSP00000311219.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309784.9Link to Ensembl Protein Viewer:ENSP00000311219.4Re-query CCDS DB by Nucleotide ID:ENST00000309784Re-query CCDS DB by Protein ID:ENSP00000311219
Original member Current member NCBI NM_173084.3 NP_775107.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173084.3Link to Protein Sequence:NP_775107.1Re-query CCDS DB by Nucleotide ID:NM_173084Re-query CCDS DB by Protein ID:NP_775107Link to BLAST:NP_775107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775107.1 403 Q8IWR1-1 403 100% 0 0

Chromosomal Locations for CCDS 3190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 160437972 160439183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGCACAATTTTGAGGAAGAGTTAACTTGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGC
CATGCTCTCATACATTTTGTAGAAATTGTTTGGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATG
GAGACCTTTACGAATTCCACTCAAGTGCCCTAATTGCAGAAGTATTACTGAAATTGCTCCAACTGGCATT
GAATCTTTACCTGTTAATTTTGCACTAAGGGCTATTATTGAAAAGTACCAGCAAGAAGACCATCCAGATA
TTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATGTTTACTGTCTATTAGATAAAAAATTAGTTTG
TGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATGACCTTCAAAGTGCCTATTTGAAA
GAAAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACACTGGACAGATCTTACCCATCTTA
TTGAAAAGCTGAAAGAACAAAAATCTCATTCTGAGAAAATGATCCAAGGCGATAAGGAAGCTGTTCTCCA
GTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACGGCTCTCTGTGATGTT
GGCAATCTAATTAATCAAGAATATACTCCACAAATTGAAAGAATGAAGGAAATACGAGAGCAGCAGCTTG
AATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTGATGATGT
ACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGA
GTAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCA
AAATGAAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTGGTAAGGATGAAAAGGAAGTTGAATTTTT
AAAAATTTTAAACATTGTTGTAGTTACATTAATTTCAGTAATACTGATGTCGATACTCTTTTTCAACCAA
CACATCATAACCTTTTTAAGTGAAATCACTTTAATATGGTTTTCTGAAGCCTCTCTATCTGTTTACCAAA
GTTTATCTAACAGTCTGCATAAGGTAAAGAATATACTGTGTCACATTTTCTATTTGTTGAAGGAATTTGT
GTGGAAAATAGTTTCCCATTGA

Translation (403 aa):
MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCRSITEIAPTGI
ESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCLLDKKLVCGHCLTIGQHHGHPIDDLQSAYLK
EKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEKMIQGDKEAVLQYFKELNDTLEQKKKSFLTALCDV
GNLINQEYTPQIERMKEIREQQLELMALTISLQEESPLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPR
VSKILKEEWSRTEIGQIKNVLIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQ
HIITFLSEITLIWFSEASLSVYQSLSNSLHKVKNILCHIFYLLKEFVWKIVSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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