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Report for CCDS3113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3113.1 Public Homo sapiens 3 TRIM42 24 110 108 CCDS HistoryNCBI Gene:287015Re-query CCDS DB by CCDS ID:3113.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3113.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286349.4 ENSP00000286349.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000286349.4Link to Ensembl Protein Viewer:ENSP00000286349.3Re-query CCDS DB by Nucleotide ID:ENST00000286349Re-query CCDS DB by Protein ID:ENSP00000286349
Original member Current member NCBI NM_152616.5 NP_689829.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152616.5Link to Protein Sequence:NP_689829.3Re-query CCDS DB by Nucleotide ID:NM_152616Re-query CCDS DB by Protein ID:NP_689829Link to BLAST:NP_689829.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689829.3 723 Q8IWZ5-1 723 100% 0 0

Chromosomal Locations for CCDS 3113.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 140678230 140678570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 140682462 140683159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 140687722 140688542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 140690968 140691192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 140700888 140700974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGGAAACTGCTATGTGCGTTTGCTGTCCATGTTGTACATGGCAGAGATGTTGTCCTCAGTTATGCTCCT
GTCTGTGCTGCAAGTTCATCTTCACCTCAGAGCGGAACTGCACCTGCTTCCCCTGCCCTTACAAAGATGA
GCGGAACTGCCAGTTCTGCCACTGCACCTGTTCTGAGAGCCCCAACTGCCATTGGTGTTGCTGCTCTTGG
GCCAATGATCCCAACTGTAAGTGCTGCTGCACAGCCAGCAGCAATCTCAACTGCTACTACTATGAGAGCC
GCTGCTGCCGCAATACCATCATCACTTTCCACAAGGGCCGCCTCAGGAGCATCCATACCTCCTCCAAGAC
TGCCCTGCGCACTGGGAGCAGCGATACCCAGGTGGATGAAGTAAAGTCAATACCAGCCAACAGTCACCTG
GTGAACCACCTCAATTGCCCCATGTGCAGCCGGCTGCGCCTGCACTCATTCATGCTGCCCTGCAACCACA
GCCTGTGCGAGAAGTGCCTGCGGCAGCTGCAGAAGCACGCCGAGGTCACCGAGAACTTCTTCATCCTCAT
CTGCCCAGTGTGCGACCGCTCGCACTGCATGCCCTACAGCAACAAGATGCAGCTGCCCGAGAACTACCTG
CACGGGCGTCTCACCAAGCGCTACATGCAGGAGCACGGCTACCTCAAGTGGCGCTTTGACCGCTCCTCCG
GGCCCATCCTCTGCCAGGTCTGCCGCAACAAGCGCATCGCTTACAAGCGCTGCATCACCTGCCGCCTCAA
CCTGTGCAACGACTGCCTCAAGGCCTTCCACTCGGATGTGGCCATGCAAGACCACGTCTTTGTGGACACC
AGCGCCGAGGAACAGGACGAGAAGATCTGCATCCACCACCCATCCAGCCGCATCATCGAGTACTGCCGCA
ATGACAACAAATTGCTCTGCACCTTCTGCAAGTTCTCTTTCCACAATGGCCACGACACCATTAGCCTCAT
CGACGCCTGCTCCGAGAGGGCCGCCTCACTCTTCAGCGCCATCGCCAAGTTCAAAGCAGTCCGATATGAA
ATTGATAATGACCTAATGGAATTCAACATCTTAAAAAACAGCTTTAAAGCTGACAAGGAGGCAAAGCGAA
AAGAGATCAGAAATGGCTTTCTCAAGTTGCGCAGCATTCTTCAGGAGAAAGAGAAGATCATCATGGAGCA
GATAGAGAATCTAGAAGTGTCCAGGCAGAAGGAAATTGAAAAATATGTGTATGTTACAACCATGAAAGTG
AACGAGATGGATGGTCTGATCGCCTACTCCAAGGAAGCCCTGAAGGAGACTGGCCAGGTGGCATTCCTGC
AGTCAGCCAAGATCCTGGTGGACCAGATCGAGGACGGCATCCAGACCACCTACAGGCCTGACCCACAGCT
CCGGCTGCACTCAATAAACTACGTGCCCTTGGACTTTGTTGAGCTTTCCAGTGCCATCCATGAGCTCTTC
CCCACAGGGCCCAAGAAGGTACGCTCCTCAGGGGACTCCCTGCCCTCCCCCTACCCCGTGCACTCAGAAA
CAATGATTGCCAGGAAGGTCACTTTCAGCACCCACAGCCTCGGCAACCAGCACATATACCAGCGAAGCTC
CTCCATGTTGTCCTTCAGCAACACTGACAAGAAGGCCAAGGTGGGTCTGGAGGCCTGTGGGAGAGCCCAG
TCAGCCACCCCCGCCAAACCCACAGACGGCCTCTACACCTACTGGAGTGCTGGAGCAGACAGCCAGTCTG
TACAGAACAGCAGCAGCTTCCACAACTGGTACTCATTCAACGATGGCTCTGTGAAGACCCCAGGCCCAAT
TGTTATCTACCAGACTCTGGTGTACCCAAGAGCTGCCAAGGTTTACTGGACATGTCCAGCAGAAGACGTG
GACTCTTTTGAGATGGAATTCTATGAAGTCATTACTTCTCCTCCTAACAACGTACAAATGGAGCTCTGTG
GACAAATTCGGGACATAATGCAGCAAAATCTGGAGCTGCACAACCTGACCCCCAACACAGAATACGTGTT
TAAAGTTAGAGCCATCAATGATAATGGTCCTGGGCAATGGAGTGATATCTGCAAGGTGGTAACACCAGAT
GGACATGGGAAGAACCGAGCTAAGTGGGGCCTGCTGAAGAATATCCAGTCTGCCCTCCAGAAGCACTTCT
GA

Translation (723 aa):
METAMCVCCPCCTWQRCCPQLCSCLCCKFIFTSERNCTCFPCPYKDERNCQFCHCTCSESPNCHWCCCSW
ANDPNCKCCCTASSNLNCYYYESRCCRNTIITFHKGRLRSIHTSSKTALRTGSSDTQVDEVKSIPANSHL
VNHLNCPMCSRLRLHSFMLPCNHSLCEKCLRQLQKHAEVTENFFILICPVCDRSHCMPYSNKMQLPENYL
HGRLTKRYMQEHGYLKWRFDRSSGPILCQVCRNKRIAYKRCITCRLNLCNDCLKAFHSDVAMQDHVFVDT
SAEEQDEKICIHHPSSRIIEYCRNDNKLLCTFCKFSFHNGHDTISLIDACSERAASLFSAIAKFKAVRYE
IDNDLMEFNILKNSFKADKEAKRKEIRNGFLKLRSILQEKEKIIMEQIENLEVSRQKEIEKYVYVTTMKV
NEMDGLIAYSKEALKETGQVAFLQSAKILVDQIEDGIQTTYRPDPQLRLHSINYVPLDFVELSSAIHELF
PTGPKKVRSSGDSLPSPYPVHSETMIARKVTFSTHSLGNQHIYQRSSSMLSFSNTDKKAKVGLEACGRAQ
SATPAKPTDGLYTYWSAGADSQSVQNSSSFHNWYSFNDGSVKTPGPIVIYQTLVYPRAAKVYWTCPAEDV
DSFEMEFYEVITSPPNNVQMELCGQIRDIMQQNLELHNLTPNTEYVFKVRAINDNGPGQWSDICKVVTPD
GHGKNRAKWGLLKNIQSALQKHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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