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Report for CCDS3447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3447.1 Public Homo sapiens 4 FAM114A1 24 110 108 CCDS HistoryNCBI Gene:92689Re-query CCDS DB by CCDS ID:3447.1Re-query CCDS DB by GeneID:92689See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3447.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358869.5 ENSP00000351740.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358869.5Link to Ensembl Protein Viewer:ENSP00000351740.2Re-query CCDS DB by Nucleotide ID:ENST00000358869Re-query CCDS DB by Protein ID:ENSP00000351740
Original member Current member NCBI NM_001375792.1 NP_001362721.1 Accepted alive Link to Nucleotide Sequence:NM_001375792.1Link to Protein Sequence:NP_001362721.1Re-query CCDS DB by Nucleotide ID:NM_001375792Re-query CCDS DB by Protein ID:NP_001362721Link to BLAST:NP_001362721.1
Original member Current member NCBI NM_138389.4 NP_612398.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138389.4Link to Protein Sequence:NP_612398.2Re-query CCDS DB by Nucleotide ID:NM_138389Re-query CCDS DB by Protein ID:NP_612398Link to BLAST:NP_612398.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362721.1 563 Q8IWE2-1 563 100% 0 0
NP_612398.2 563 Q8IWE2-1 563 100% 0 0

Chromosomal Locations for CCDS 3447.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 38878079 38878426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38891743 38891830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38905522 38905635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38905755 38905861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38908592 38908726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38914921 38915073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38922770 38922893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38929242 38929333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38931451 38931612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38932235 38932374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38935718 38935790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38940968 38941021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 38943456 38943557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGTCTGATGATGCTGGTGACACCTTAGCCACTGGAGACAAAGCAGAAGTTACTGAGATGCCTAATAGTG
ATTCTTTACCTGAGGATGCAGAAGTGCATTGTGATTCAGCTGCAGTTTCACATGAGCCAACACCAGCTGA
CCCCAGAGGGGAGGGGCATGAAAATGCAGCTGTGCAGGGTGCAGGGGCTGCCGCCATTGGGCCCCCTGTG
CAGCCTCAGGATGCCAACGCCCTGGAGCCCCCTCTCAATGGAGACGTGACTGAGGATACACTTGCTGAAT
GTATTGATTCCGTCAGCCTTGAGGCAGAACCCAGATCCGAAATACCCCTGCAAGAACAGAATTATCTGGC
TGTGGATTCCCCTCCAAGTGGAGGAGGATGGGCAGGCTGGGGATCCTGGGGCAAATCTCTGCTGTCGTCA
GCATCTGCCACAGTAGGTCATGGATTGACGGCAGTCAAGGAAAAAGCAGGAGCCACTCTACGGATTCATG
GTGTAAATTCTGGATCTTCTGAAGGAGCCCAACCAAATACTGAAAACGGAGTCCCTGAAATAACAGATGC
AGCCACAGATCAGGGCCCTGCAGAAAGCCCACCCACTTCCCCTTCATCAGCCTCTCGGGGTATGCTGTCT
GCCATCACCAATGTGGTTCAAAACACAGGTAAAAGTGTCTTAACTGGAGGCCTTGATGCGTTGGAATTCA
TCGGCAAGAAAACCATGAATGTCCTTGCAGAAAGTGACCCGGGCTTTAAGCGGACCAAGACGCTCATGGA
GAGAACTGTTTCCTTGTCTCAGATGTTAAGGGAAGCTAAGGAGAAGGAGAAGCAGAGACTGGCACAGCAG
CTCACGATGGAGAGAACCGCGCACTACGGGATGCTGTTTGATGAATATCAAGGCTTGTCACACCTGGAAG
CCCTGGAAATTCTGTCCAATGAAAGCGAAAGCAAGGTTCAGTCATTTTTAGCATCACTTGATGGAGAGAA
GCTGGAACTCTTAAAAAATGACCTAATTTCCATTAAAGACATCTTTGCAGCCAAAGAATTAGAGAATGAA
GAAAATCAAGAAGAACAAGGCTTAGAAGAAAAGGGAGAAGAATTTGCTCGCATGCTTACAGAGCTTCTCT
TTGAATTACATGTGGCGGCCACACCTGACAAACTCAATAAGGCCATGAAGAGGGCTCATGACTGGGTGGA
AGAGGATCAAACCGTGGTGTCAGTAGATGTGGCAAAAGTGTCCGAAGAAGAAACAAAGAAGGAAGAAAAG
GAAGAGAAATCTCAAGACCCTCAAGAAGACAAAAAGGAGGAAAAGAAAACTAAGACCATAGAGGAAGTAT
ACATGTCGTCCATTGAAAGTCTGGCGGAGGTAACAGCGCGCTGTATTGAGCAGCTTCATAAAGTAGCAGA
ATTAATTCTTCATGGACAAGAAGAGGAAAAACCAGCTCAGGACCAAGCAAAAGTTCTAATAAAATTAACT
ACTGCAATGTGCAATGAAGTGGCCTCTTTATCAAAGAAGTTTACGAATTCTTTAACCACTGTTGGGAGCA
ACAAGAAGGCCGAGGTCCTTAACCCCATGATCAGTAGTGTATTGTTAGAGGGCTGCAACAGTACAACGTA
CATACAGGATGCCTTCCAGCTGCTGCTGCCTGTTCTGCAGGTCTCACATATCCAGACCAGTTGTTTGAAA
GCACAGCCGTGA

Translation (563 aa):
MSDDAGDTLATGDKAEVTEMPNSDSLPEDAEVHCDSAAVSHEPTPADPRGEGHENAAVQGAGAAAIGPPV
QPQDANALEPPLNGDVTEDTLAECIDSVSLEAEPRSEIPLQEQNYLAVDSPPSGGGWAGWGSWGKSLLSS
ASATVGHGLTAVKEKAGATLRIHGVNSGSSEGAQPNTENGVPEITDAATDQGPAESPPTSPSSASRGMLS
AITNVVQNTGKSVLTGGLDALEFIGKKTMNVLAESDPGFKRTKTLMERTVSLSQMLREAKEKEKQRLAQQ
LTMERTAHYGMLFDEYQGLSHLEALEILSNESESKVQSFLASLDGEKLELLKNDLISIKDIFAAKELENE
ENQEEQGLEEKGEEFARMLTELLFELHVAATPDKLNKAMKRAHDWVEEDQTVVSVDVAKVSEEETKKEEK
EEKSQDPQEDKKEEKKTKTIEEVYMSSIESLAEVTARCIEQLHKVAELILHGQEEEKPAQDQAKVLIKLT
TAMCNEVASLSKKFTNSLTTVGSNKKAEVLNPMISSVLLEGCNSTTYIQDAFQLLLPVLQVSHIQTSCLK
AQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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