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Report for CCDS13692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13692.1 Public Homo sapiens 21 PKNOX1 24 110 108 CCDS HistoryNCBI Gene:5316Re-query CCDS DB by CCDS ID:13692.1Re-query CCDS DB by GeneID:5316See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13692.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291547.10 ENSP00000291547.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291547.10Link to Ensembl Protein Viewer:ENSP00000291547.4Re-query CCDS DB by Nucleotide ID:ENST00000291547Re-query CCDS DB by Protein ID:ENSP00000291547
Original member Current member NCBI NM_004571.5 NP_004562.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004571.5Link to Protein Sequence:NP_004562.2Re-query CCDS DB by Nucleotide ID:NM_004571Re-query CCDS DB by Protein ID:NP_004562Link to BLAST:NP_004562.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004562.2 436 P55347-1 436 100% 0 0

Chromosomal Locations for CCDS 13692.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 43004382 43004432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43007491 43007618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43010053 43010224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43013068 43013238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43016908 43017007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43018133 43018230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43021303 43021431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43024871 43024947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43028702 43028874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43029890 43030101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGATGGCTACACAGACATTAAGTATAGACAGCTATCAAGATGGGCAACAGATGCAAGTAGTAACAGAGT
TAAAGACAGAACAAGATCCAAACTGCTCTGAACCCGATGCAGAAGGAGTGAGCCCTCCCCCTGTGGAGTC
TCAGACCCCGATGGATGTGGACAAGCAGGCCATTTATAGGCATCCACTATTTCCATTATTAGCTTTGTTG
TTTGAAAAATGTGAACAATCTACACAGGGCTCTGAAGGCACAACTTCTGCCAGTTTTGATGTAGACATCG
AAAATTTTGTAAGAAAGCAAGAGAAGGAAGGGAAACCTTTCTTTTGTGAAGATCCAGAAACTGATAATTT
AATGGTAAAAGCAATCCAGGTTTTGCGCATTCATCTTCTTGAGCTGGAAAAGGTTAACGAACTCTGCAAA
GATTTCTGCAGTCGATACATTGCTTGTCTGAAAACAAAAATGAACAGTGAAACTCTGTTGAGTGGAGAGC
CTGGAAGCCCGTACTCACCAGTGCAGTCCCAGCAGATTCAAAGTGCCATCACAGGCACCATCAGCCCTCA
GGGAATTGTGGTGCCGGCGTCCGCGCTGCAGCAGGGAAACGTAGCCATGGCGACGGTGGCAGGTGGCACA
GTGTATCAGCCTGTCACGGTCGTCACTCCCCAAGGCCAAGTGGTCACACAGACATTGTCGCCTGGGACAA
TTAGGATCCAGAACTCCCAGCTTCAGTTACAGTTAAACCAAGATCTCAGCATCTTGCATCAAGATGATGG
TTCATCTAAGAACAAGAGGGGCGTCCTGCCAAAGCATGCCACGAACGTGATGCGGTCCTGGCTCTTCCAG
CACATCGGGCATCCCTACCCAACAGAGGATGAGAAAAAACAGATTGCTGCTCAGACAAATTTGACACTAC
TCCAAGTCAACAACTGGTTCATCAATGCCAGAAGACGAATTCTTCAGCCAATGTTGGATTCAAGTTGTTC
AGAGACCCCCAAAACAAAGAAAAAAACTGCTCAGAACCGGCCAGTTCAGAGGTTTTGGCCTGATTCTATT
GCATCAGGAGTCGCACAGCCACCGCCGAGCGAGCTCACCATGTCGGAAGGAGCTGTTGTCACCATCACCA
CGCCCGTGAACATGAACGTGGACAGCCTTCAGTCTCTGTCCTCGGACGGGGCCACCCTGGCGGTGCAGCA
GGTCATGATGGCAGGGCAGAGCGAGGACGAGTCTGTGGACAGCACAGAGGAGGATGCGGGTGCCCTGGCC
CCTGCCCACATCAGCGGGCTGGTCTTGGAGAACAGTGACTCCCTGCAGTAG

Translation (436 aa):
MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYRHPLFPLLALL
FEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCK
DFCSRYIACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAITGTISPQGIVVPASALQQGNVAMATVAGGT
VYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLPKHATNVMRSWLFQ
HIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKKKTAQNRPVQRFWPDSI
ASGVAQPPPSELTMSEGAVVTITTPVNMNVDSLQSLSSDGATLAVQQVMMAGQSEDESVDSTEEDAGALA
PAHISGLVLENSDSLQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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