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Report for CCDS1247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1247.1 Public Homo sapiens 1 LMX1A 24 110 108 CCDS HistoryNCBI Gene:4009Re-query CCDS DB by CCDS ID:1247.1Re-query CCDS DB by GeneID:4009See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1247.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294816.6 ENSP00000294816.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000294816.6Link to Ensembl Protein Viewer:ENSP00000294816.2Re-query CCDS DB by Nucleotide ID:ENST00000294816Re-query CCDS DB by Protein ID:ENSP00000294816
Original member Current member EBI ENST00000342310.7 ENSP00000340226.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342310.7Link to Ensembl Protein Viewer:ENSP00000340226.3Re-query CCDS DB by Nucleotide ID:ENST00000342310Re-query CCDS DB by Protein ID:ENSP00000340226
Original member Current member EBI ENST00000367893.4 ENSP00000356868.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367893.4Link to Ensembl Protein Viewer:ENSP00000356868.4Re-query CCDS DB by Nucleotide ID:ENST00000367893Re-query CCDS DB by Protein ID:ENSP00000356868
Original member Current member NCBI NM_001174069.2 NP_001167540.1 Accepted alive Link to Nucleotide Sequence:NM_001174069.2Link to Protein Sequence:NP_001167540.1Re-query CCDS DB by Nucleotide ID:NM_001174069Re-query CCDS DB by Protein ID:NP_001167540Link to BLAST:NP_001167540.1
Original member Current member NCBI NM_177398.4 NP_796372.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_177398.4Link to Protein Sequence:NP_796372.1Re-query CCDS DB by Nucleotide ID:NM_177398Re-query CCDS DB by Protein ID:NP_796372Link to BLAST:NP_796372.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167540.1 382 Q8TE12-1 382 100% 0 0
NP_796372.1 382 Q8TE12-1 382 100% 0 0

Chromosomal Locations for CCDS 1247.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 165203880 165204040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165205864 165206034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165208063 165208132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165210699 165210776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165213641 165213813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165249408 165249640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165353076 165353262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165355484 165355559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGCTGGACGGCCTAAAGATGGAGGAGAACTTCCAAAGCGCGATCGACACCTCGGCCTCCTTCTCCTCGC
TGCTGGGCAGAGCGGTGAGCCCCAAGTCTGTCTGCGAGGGCTGTCAGCGGGTCATCTTGGACAGGTTTCT
GCTGCGGCTCAACGACAGCTTCTGGCATGAGCAGTGCGTGCAGTGCGCCTCCTGCAAAGAGCCCCTGGAG
ACCACCTGCTTCTACCGGGACAAGAAGCTGTACTGCAAGTATGACTACGAGAAGCTGTTTGCTGTTAAAT
GTGGGGGCTGCTTCGAGGCCATCGCTCCCAATGAGTTTGTTATGCGGGCCCAGAAGAGTGTATACCACCT
GAGCTGCTTCTGCTGCTGTGTCTGCGAGCGACAGCTTCAGAAGGGTGATGAGTTTGTCCTGAAGGAGGGG
CAGCTGCTCTGCAAAGGGGACTATGAGAAGGAGCGGGAGCTGCTCAGCCTGGTGAGCCCAGCAGCCTCAG
ACTCAGGTAAAAGTGATGATGAAGAAAGTCTCTGCAAGTCAGCCCATGGGGCAGGGAAAGGAACTGCTGA
GGAAGGCAAGGACCATAAGCGCCCCAAACGTCCGAGAACCATCTTGACAACTCAACAGAGGCGAGCATTC
AAGGCCTCATTTGAAGTATCCTCCAAGCCCTGCAGGAAGGTGAGAGAGACTCTGGCTGCAGAGACAGGGC
TGAGTGTCCGTGTCGTCCAGGTGTGGTTCCAAAACCAGAGAGCGAAGATGAAGAAGCTGGCCAGGCGACA
GCAGCAGCAGCAGCAAGATCAGCAGAACACCCAGAGGCTGAGCTCTGCTCAGACAAACGGTGGTGGGAGT
GCTGGGATGGAAGGAATCATGAACCCCTACACGGCTCTGCCCACCCCACAGCAGCTCCTGGCCATCGAGC
AGAGTGTCTACAGCTCAGATCCCTTCCGACAGGGTCTCACCCCACCCCAGATGCCTGGAGACCACATGCA
CCCTTATGGTGCCGAGCCCCTTTTCCATGACCTGGATAGCGACGACACCTCCCTCAGTAACCTGGGTGAT
TGTTTCCTAGCAACCTCAGAAGCTGGGCCTCTGCAGTCCAGAGTGGGAAACCCCATTGACCATCTGTACT
CCATGCAGAATTCTTACTTCACATCTTGA

Translation (382 aa):
MLDGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLE
TTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEG
QLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPKRPRTILTTQQRRAF
KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQQDQQNTQRLSSAQTNGGGS
AGMEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGD
CFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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