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Report for CCDS52233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52233.1 Public Mus musculus 7 Mybpc2 23 108 98 CCDS HistoryNCBI Gene:233199Re-query CCDS DB by CCDS ID:52233.1Re-query CCDS DB by GeneID:233199See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165208.3 ENSMUSP00000130127.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165208.3Link to Ensembl Protein Viewer:ENSMUSP00000130127.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165208Re-query CCDS DB by Protein ID:ENSMUSP00000130127
Original member Current member NCBI NM_146189.3 NP_666301.2 Accepted alive Link to Nucleotide Sequence:NM_146189.3Link to Protein Sequence:NP_666301.2Re-query CCDS DB by Nucleotide ID:NM_146189Re-query CCDS DB by Protein ID:NP_666301Link to BLAST:NP_666301.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666301.2 1136 Q5XKE0 1136 100% 0 0

Chromosomal Locations for CCDS 52233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44501832 44501842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44503637 44503823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44504999 44505135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44505236 44505395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44505566 44505705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44506052 44506247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44506808 44506896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44507035 44507202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44508231 44508365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44508969 44509157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44509534 44509638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44509731 44509890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44511809 44511948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44512092 44512121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44512461 44512567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44513668 44513833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44514849 44515021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44515926 44516031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44516143 44516267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44516383 44516515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44516811 44517004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44520333 44520392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44520739 44520787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44521675 44521792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44521980 44522128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44522321 44522407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44522831 44522908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44524571 44524589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3411 nt):
ATGCCTGAGGCTAAACCAGCGGCCAAAAAGGCCTCCAAAGGCAAAGATGCCCCAAAGGAAGCCCCTGCAA
AGCAGACTCCTGAAGAGCCCCCCAAAGAGGCCCCACCTGAGGACCAATCCCCAACTGCGGAGGAGCCCAC
AGGCATCTTCCTGAAAAAGCCGGACTCTGTGTCAGTGGAGACTGGGAAAGACGCGGTGATTCTGGCCAAG
GTGAACGGGAAGGAGCTCCCAGGCAAGCCGACCATCAAGTGGTTCAAGGGGAAGTGGCAGGAGCTGGGCA
GCAAGAGCGGAGCCCGGTTCATCTTCAAGGAATCTCATGACTCTACCAGCAATGTGTACACCGTGGAGCT
CCACATTGGGAAGGTGGTCCTAGGGGACCGCGGGGATTACCGTCTAGAGATCAAAGCCAAGGATGTCTGC
GACAGCTGCTCGTTCAACGTGGATGTGGAGGCACCCCGTCAGGACTCATCCGGTCAGAGCCTCGAGAGCT
TCAAGCGTTCGGGTGACGGGAAGTCAGAAGATGCAGGCGAGCTGGATTTCAGTGGCTTGTTGAAGAAGAG
GGAAGTAGTTGAGGAGGAGAAGAAGAAGAAGAAAGATGATGATGATCTGGGTATACCTCCGGAGATTTGG
GAGCTCCTGAAAGGGGCCAAGAAGAGCGAGTACGAGAAGATCGCCTTCCAGTACGGCATCACTGACCTCC
GTGGCATGCTGAAGCGGCTCAAGAAGGCCAAGGTGGAGGTCAAGAAGAGTGCAGCCTTCACTAAGAAGTT
GGACCCAGCCTACCAAGTAGACAGGGGCAACAAGATCAAGCTGGTGGTGGAGATCAGTGACCCAGACCTT
CCTCTCAAGTGGTTCAAGAATGGCCAGGAGATCAAACCAAGCAGCAAGTATGTGTTTGAGAACGTTGGGA
AGAAACGAATTCTTACCATCAACAAGTGCACGCTGGCGGATGATGCTGCATACGAGGTGGCAGTCCAAGA
TGAGAAGTGTTTCACTGAACTCTTTGTCAAAGAGCCCCCAGTCTTGATTGTCACCCCACTGGAGGACCAG
CAGGTATTCGTAGGTGACCGAGTGGAAATGTCGGTAGAGGTGTCAGAAGAGGGTGCACAGGTTATGTGGA
TGAAAGATGGTGTGGAGATGACTCGGGAGGATTCCTACAAGGCGCGCTACCGCTTCAAGAAGGACGGGAA
ACGGCACATCCTCATCTACTCTGATGTGGCCCAGGAGGATGGGGGCCGCTACCAGGTCATAACCAATGGT
GGCCAGTGTGAGGCTGAACTCATTGTGGAAGAGAAGCAACTGGAGGTCCTGCAGGACATTGCTGACCTGA
CAGTGAAGGCTGCAGAGCAGGCTGTGTTCAAGTGTGAAGTGTCTGATGAGAAGGTGACAGGCAAATGGTA
CAAGAACGGCGTGGAGGTACGACCCAGCAAGAGGATCACCATCTCCCATGTGGGCAGATTCCACAAGCTG
GTGATTGATGACGTCCGCCCTGAGGATGAGGGAGACTACACATTCGTGCCCGATGGCTATGCCCTATCCC
TCTCAGCCAAGCTCAACTTTTTGGAAATCAAAGTGGAGTATGTACCTAAGCAAGAGCCCCCGAAGATCCA
CCTGGACTGCTCAGGGAAGACCTCAGATAACTCAATTGTTGTGGTGGCTGGAAACAAGCTGCGGCTGGAT
GTGGCCATCACAGGGGAACCACCTCCCACTGCTACCTGGCTAAGGGGAGATGAGGTGTTCACAGCCACAG
AAGGCAGGACACACATCGAGCAGAGGCCAGACTGCAGCAGCTTTGTGATCGAGAGTGCGGAGCGGTCGGA
TGAGGGCCGCTACACCATCAAAGTCACCAATCCTGTGGGCGAGGACGTGGCCTCCATTTTCCTGCGGGTT
GTGGATGTTCCTGATCCTCCAGAGGCTGTCCGTGTCACCTCAGTTGGAGAAGACTGGGCCATTCTGGTCT
GGGAGCCACCCAAGTATGATGGAGGACAGCCAGTGACTGGGTACTTGATGGAGCGGAAGAAGAAAGGCTC
CCAGCGCTGGATGAAGATCAACTTTGAGGTCTTCACTGACACCACCTACGAGTCCACAAAGATGATCGAG
GGCGTCCTTTATGAGATGCGGGTCTTCGCTGTCAACGCCATTGGGGTCTCACAGCCCAGCATGAACACCA
AGCCCTTCATGCCCATTGCTCCCACGAGTGCACCACAACACCTCACCGTGGAGGATGTGACGGACACCAC
CACCACACTTAAGTGGAGACCTCCAGATCGGATTGGTGCTGGTGGCATTGATGGCTACCTGGTGGAGTAC
TGCCTGGAGGGCTCTGAGGAATGGGTACCAGCTAACAAGGAGCCAGTGGAACGCTGTGGCTTCACTGTCA
AGGATCTCCCAACTGGAGCCAGGATCCTCTTCCGGGTTGTTGGGGTCAACATCGCAGGGCGCAGTGAACC
AGCCACCCTCCTTCAGCCAGTCACTATCAGGGAGATTGTGGAGCAACCTAAGATCCGCCTTCCCCGCCAT
CTTCGTCAGACTTATATCCGAAAAGTTGGGGAGGCCCTCAACCTCGTCATCCCCTTCCAGGGCAAGCCCC
GGCCTCAGGTGGTGTGGACCAAGGGTGGGGCTCCCTTGGATACCTCCCGTGTGAATGTGCGGACTAGTGA
CTTCGACACAGTGTTCTTCGTGCGACAGGCGGCCCGCTCTGACTCCGGAGAGTATGAGCTGAGTGTGCAG
ATTGAAAACATGAAGGACACTGCTACCATACGCATCCGGGTCGTGGAAAAGGCAGGGCCAGCAGAGAATG
TGATGGTGAAGGAGGTGTGGGGCACAAATGCTCTGGTGGAGTGGCAGCCGCCCAAGGATGACGGGAACAG
TGAGATCACAGGCTACTTTGTCCAGAAGGCTGACAAAAAGACCATGGAGTGGTTCAATGTCTACGAACAC
AATCGCCACACCAGCTGTACGGTGTCTGACCTCATTGTGGGTAATGAGTACTACTTCCGTATCTTCAGCG
AGAACATCTGCGGTCTCAGTGACTCGCCAGGTGTCTCCAAGAACACAGCTCGAATTCTCAAGACAGGAAT
CACCTTAAAACCACTGGAGTACAAGGAGCATGATTTCCGGACGGCTCCCAAGTTCCTGACCCCGCTGATG
GACCGGGTCGTGGTGGCGGGATATACCGCAGCTCTCAACTGTGCCGTCAGAGGCCACCCTAAGCCAAAGG
TGGTGTGGATGAAGAACAAGATGGAAATCCATGAAGATCCCAAATTCCTCATAACCAACTACCAGGGCAT
CCTGACACTGAACATCCGCCGACCGTCACCCTTTGATGCAGGGACCTATTCCTGCCGCGCCTTCAATGAG
CTGGGGGAAGCCCTGGCTGAATGCAAACTGGATGTCCGAGTGCCACAGTGA

Translation (1136 aa):
MPEAKPAAKKASKGKDAPKEAPAKQTPEEPPKEAPPEDQSPTAEEPTGIFLKKPDSVSVETGKDAVILAK
VNGKELPGKPTIKWFKGKWQELGSKSGARFIFKESHDSTSNVYTVELHIGKVVLGDRGDYRLEIKAKDVC
DSCSFNVDVEAPRQDSSGQSLESFKRSGDGKSEDAGELDFSGLLKKREVVEEEKKKKKDDDDLGIPPEIW
ELLKGAKKSEYEKIAFQYGITDLRGMLKRLKKAKVEVKKSAAFTKKLDPAYQVDRGNKIKLVVEISDPDL
PLKWFKNGQEIKPSSKYVFENVGKKRILTINKCTLADDAAYEVAVQDEKCFTELFVKEPPVLIVTPLEDQ
QVFVGDRVEMSVEVSEEGAQVMWMKDGVEMTREDSYKARYRFKKDGKRHILIYSDVAQEDGGRYQVITNG
GQCEAELIVEEKQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKL
VIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPKQEPPKIHLDCSGKTSDNSIVVVAGNKLRLD
VAITGEPPPTATWLRGDEVFTATEGRTHIEQRPDCSSFVIESAERSDEGRYTIKVTNPVGEDVASIFLRV
VDVPDPPEAVRVTSVGEDWAILVWEPPKYDGGQPVTGYLMERKKKGSQRWMKINFEVFTDTTYESTKMIE
GVLYEMRVFAVNAIGVSQPSMNTKPFMPIAPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEY
CLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIREIVEQPKIRLPRH
LRQTYIRKVGEALNLVIPFQGKPRPQVVWTKGGAPLDTSRVNVRTSDFDTVFFVRQAARSDSGEYELSVQ
IENMKDTATIRIRVVEKAGPAENVMVKEVWGTNALVEWQPPKDDGNSEITGYFVQKADKKTMEWFNVYEH
NRHTSCTVSDLIVGNEYYFRIFSENICGLSDSPGVSKNTARILKTGITLKPLEYKEHDFRTAPKFLTPLM
DRVVVAGYTAALNCAVRGHPKPKVVWMKNKMEIHEDPKFLITNYQGILTLNIRRPSPFDAGTYSCRAFNE
LGEALAECKLDVRVPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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