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Report for CCDS42590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42590.1 Public Homo sapiens 19 SLC6A16 24 110 108 CCDS HistoryNCBI Gene:28968Re-query CCDS DB by CCDS ID:42590.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42590.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335875.9 ENSP00000338627.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335875.9Link to Ensembl Protein Viewer:ENSP00000338627.3Re-query CCDS DB by Nucleotide ID:ENST00000335875Re-query CCDS DB by Protein ID:ENSP00000338627
Original member Current member NCBI NM_014037.3 NP_054756.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014037.3Link to Protein Sequence:NP_054756.2Re-query CCDS DB by Nucleotide ID:NM_014037Re-query CCDS DB by Protein ID:NP_054756Link to BLAST:NP_054756.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054756.2 736 Q9GZN6-1 736 100% 0 0

Chromosomal Locations for CCDS 42590.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49290123 49290392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49290605 49290767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49293223 49293382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49293827 49294028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49294367 49294553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49308876 49309117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49309301 49309411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49309651 49309826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49310040 49310166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49310353 49310510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49310933 49311347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGAAGACAGAGGCCCAGCCTTCGACATCCTTGCTGGCAAACACCTCATGGACTGGCACAGTGATTTCTG
ACAGTGTCCCAGGAAGTCAAACGTGGGAAGACAAGGGTTCATTGACCCGGTCTGCAACATCTTGGACCTC
AGAGGCCCAAGTTTCAGCAGCCCGGGTTGCAGAGGCTCAGGCCAGGACCAGTCAGCCCAAGCAAATTTCT
GTATTGGAGGCGTTAACTGCCTCAGCCCTGAACCAGAAACCCACGCATGAGAAGGTGCAGATGACAGAGA
AGAAAGAGAGTGAGGTCCTCCTTGCCCGTCCGTTCTGGTCCAGCAAAACTGAGTATATTCTGGCTCAGGT
GGGCTTCTCTATGAAGCCATCTTGTCTCTGGCGCTTTGCCTACCTGTGGCTTAACAGTGGAGGCTGCAGT
TTCGCTGCCATCTACATCTTCATGCTGTTCCTGGTCGGGGTTCCTCTTCTCTTCCTGGAGATGGCAGCTG
GTCAGAGCATGCGTCAGGGTGGCATGGGTGTATGGAAGATCATTGCCCCCTGGATTGGTGGTGTGGGGTA
TTCTAGCTTCATGGTGTGCTTCATCCTCGGCCTGTACTTCAATGTGGTCAATTCCTGGATCATCTTCTAC
ATGAGCCAGTCCTTCCAGTTTCCCGTTCCATGGGAGAAATGTCCCTTAACGATGAACTCTAGTGGCTTTG
ATCCTGAATGTGAACGGACAACACCCTCCATATACTTCTGGTACCAGCAGGCCTTGAAGGCCTCAGACAG
AATCGAGGATGGCGGGTCACCAGTCTACAGTCTGGTCCTGCCCTTCTTTCTTTGCTGGTGTCTTGTTGGT
GCTTTCATGATCAATGGGCTCAAGTCCACTGGGAAGGTAATCTATGTCTTGGTACTGCTCCCCTGTTTCA
TCATTGTCGGTTTCTTCATCCGGACTCTACTCCTGGAAGGGGCAAAATTTGGCCTTCAACAGTTGGTGGT
TGCCAAGATATCGGATGTGTACAATATGAGTGTGTGGTCTCTAGCAGGGGGTCAAGTTTTGTCTAACACA
GGCATAGGCCTTGGCTCCGTTGCCTCCTTAGCCTCCTACATGCCCCAGTCCAACAACTGTCTCAGTGATG
CCTTTCTCGTGTCTGTGATAAACCTGCTCACTTTGTTGGTTTTCACATCTTTCAACTTCTGTGTCCTGGG
CTTCTGGGCGACAGTCATCACACATCGCTGCTGTGAGAGGAATGCTGAAATACTTTTAAAGCTGATAAAC
CTAGGGAAACTGCCTCCTGATGCCAAGCCCCCTGTCAACCTGCTTTACAACCCAACCTCCATCTACAATG
CCTGGCTCAGTGGCCTTCCCCAGCACATCAAAAGCATGGTTCTCCGCGAGGTGACTGAGTGCAACATAGA
GACTCAGTTTCTTAAGGCTAGCGAGGGCCCAAAGTTTGCATTCCTGTCCTTTGTTGAAGCCATGTCCTTC
CTTCCTCCGTCTGTCTTCTGGTCTTTTATCTTCTTCCTGATGTTGCTGGCCATGGGGCTGAGCAGCGCAA
TAGGGATTATGCAGGGCATCATTACTCCACTCCAGGACACCTTCTCTTTCTTCAGGAAACATACAAAGCT
GCTCATAGTGGGAGTCTTTTTGCTCATGTTCGTGTGCGGCCTCTTCTTCACTCGACCTTCAGGCAGCTAC
TTCATCAGACTGCTGAGTGACTACTGGATAGTCTTCCCCATCATCGTCGTTGTCGTATTTGAAACCATGG
CTGTATCCTGGGCCTATGGGGCCAGGAGGTTCCTTGCAGACCTGACGATCCTGTTGGGCCACCCCATCTC
TCCCATCTTTGGTTGGCTGTGGCCCCATCTGTGTCCAGTTGTGCTGCTAATCATCTTTGTGACCATGATG
GTTCATCTTTGTATGAAGCCGATCACCTACATGTCCTGGGACTCAAGCACCTCAAAAGAGGTGCTTCGAC
CATACCCACCGTGGGCACTGCTCTTGATGATCACCCTTTTTGCCATTGTCATCCTCCCCATCCCTGCATA
CTTTGTATACTGCCGCATACATAGGATTCCCTTCAGGCCCAAGAGCGGAGACGGGCCTATGACAGCCTCC
ACATCCCTACCCCTAAGTCACCAGCTAACACCCAGTAAAGAGGTTCAAAAGGAAGAAATTCTACAAGTTG
ATGAAACAAAGTACCCATCAACTTGTAATGTGACTTCCTAA

Translation (736 aa):
MKTEAQPSTSLLANTSWTGTVISDSVPGSQTWEDKGSLTRSATSWTSEAQVSAARVAEAQARTSQPKQIS
VLEALTASALNQKPTHEKVQMTEKKESEVLLARPFWSSKTEYILAQVGFSMKPSCLWRFAYLWLNSGGCS
FAAIYIFMLFLVGVPLLFLEMAAGQSMRQGGMGVWKIIAPWIGGVGYSSFMVCFILGLYFNVVNSWIIFY
MSQSFQFPVPWEKCPLTMNSSGFDPECERTTPSIYFWYQQALKASDRIEDGGSPVYSLVLPFFLCWCLVG
AFMINGLKSTGKVIYVLVLLPCFIIVGFFIRTLLLEGAKFGLQQLVVAKISDVYNMSVWSLAGGQVLSNT
GIGLGSVASLASYMPQSNNCLSDAFLVSVINLLTLLVFTSFNFCVLGFWATVITHRCCERNAEILLKLIN
LGKLPPDAKPPVNLLYNPTSIYNAWLSGLPQHIKSMVLREVTECNIETQFLKASEGPKFAFLSFVEAMSF
LPPSVFWSFIFFLMLLAMGLSSAIGIMQGIITPLQDTFSFFRKHTKLLIVGVFLLMFVCGLFFTRPSGSY
FIRLLSDYWIVFPIIVVVVFETMAVSWAYGARRFLADLTILLGHPISPIFGWLWPHLCPVVLLIIFVTMM
VHLCMKPITYMSWDSSTSKEVLRPYPPWALLLMITLFAIVILPIPAYFVYCRIHRIPFRPKSGDGPMTAS
TSLPLSHQLTPSKEVQKEEILQVDETKYPSTCNVTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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