NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55272.1 Public Homo sapiens 8 SLC30A8 24 110 108 CCDS HistoryNCBI Gene:169026Re-query CCDS DB by CCDS ID:55272.1Re-query CCDS DB by GeneID:169026See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427715.2 ENSP00000407505.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427715.2Link to Ensembl Protein Viewer:ENSP00000407505.2Re-query CCDS DB by Nucleotide ID:ENST00000427715Re-query CCDS DB by Protein ID:ENSP00000407505
Original member Current member EBI ENST00000521243.5 ENSP00000428545.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521243.5Link to Ensembl Protein Viewer:ENSP00000428545.1Re-query CCDS DB by Nucleotide ID:ENST00000521243Re-query CCDS DB by Protein ID:ENSP00000428545
Original member Current member EBI ENST00000519688.5 ENSP00000431069.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519688.5Link to Ensembl Protein Viewer:ENSP00000431069.1Re-query CCDS DB by Nucleotide ID:ENST00000519688Re-query CCDS DB by Protein ID:ENSP00000431069
Original member Current member NCBI NM_001172811.2 NP_001166282.1 Accepted alive Link to Nucleotide Sequence:NM_001172811.2Link to Protein Sequence:NP_001166282.1Re-query CCDS DB by Nucleotide ID:NM_001172811Re-query CCDS DB by Protein ID:NP_001166282Link to BLAST:NP_001166282.1
Original member Current member NCBI NM_001172813.2 NP_001166284.1 Accepted alive Link to Nucleotide Sequence:NM_001172813.2Link to Protein Sequence:NP_001166284.1Re-query CCDS DB by Nucleotide ID:NM_001172813Re-query CCDS DB by Protein ID:NP_001166284Link to BLAST:NP_001166284.1
Original member Current member NCBI NM_001172814.2 NP_001166285.1 Accepted alive Link to Nucleotide Sequence:NM_001172814.2Link to Protein Sequence:NP_001166285.1Re-query CCDS DB by Nucleotide ID:NM_001172814Re-query CCDS DB by Protein ID:NP_001166285Link to BLAST:NP_001166285.1
Original member Current member NCBI NM_001172815.3 NP_001166286.1 Accepted alive Link to Nucleotide Sequence:NM_001172815.3Link to Protein Sequence:NP_001166286.1Re-query CCDS DB by Nucleotide ID:NM_001172815Re-query CCDS DB by Protein ID:NP_001166286Link to BLAST:NP_001166286.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166282.1 320 Q8IWU4-2 320 100% 0 0
NP_001166284.1 320 Q8IWU4-2 320 100% 0 0
NP_001166285.1 320 Q8IWU4-2 320 100% 0 0
NP_001166286.1 320 Q8IWU4-2 320 100% 0 0

Chromosomal Locations for CCDS 55272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 117147030 117147153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117152944 117153090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117157691 117157844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117161738 117161888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117163425 117163530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117171034 117171168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117172536 117172681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGTACCACTGCCACAGTGGCTCCAAGCCCACAGAAAAGGGGGCGAATGAGTACGCCTATGCCAAGTGGA
AACTCTGTTCTGCTTCAGCAATATGCTTCATTTTCATGATTGCAGAGGTCGTGGGTGGGCACATTGCTGG
GAGTCTTGCTGTTGTCACAGATGCTGCCCACCTCTTAATTGACCTGACCAGTTTCCTGCTCAGTCTCTTC
TCCCTGTGGTTGTCATCGAAGCCTCCCTCTAAGCGGCTGACATTTGGATGGCACCGAGCAGAGATCCTTG
GTGCCCTGCTCTCCATCCTGTGCATCTGGGTGGTGACTGGCGTGCTAGTGTACCTGGCATGTGAGCGCCT
GCTGTATCCTGATTACCAGATCCAGGCGACTGTGATGATCATCGTTTCCAGCTGCGCAGTGGCGGCCAAC
ATTGTACTAACTGTGGTTTTGCACCAGAGATGCCTTGGCCACAATCACAAGGAAGTACAAGCCAATGCCA
GCGTCAGAGCTGCTTTTGTGCATGCCCTTGGAGATCTATTTCAGAGTATCAGTGTGCTAATTAGTGCACT
TATTATCTACTTTAAGCCAGAGTATAAAATAGCCGACCCAATCTGCACATTCATCTTTTCCATCCTGGTC
TTGGCCAGCACCATCACTATCTTAAAGGACTTCTCCATCTTACTCATGGAAGGTGTGCCAAAGAGCCTGA
ATTACAGTGGTGTGAAAGAGCTTATTTTAGCAGTCGACGGGGTGCTGTCTGTGCACAGCCTGCACATCTG
GTCTCTAACAATGAATCAAGTAATTCTCTCAGCTCATGTTGCTACAGCAGCCAGCCGGGACAGCCAAGTG
GTTCGGAGAGAAATTGCTAAAGCCCTTAGCAAAAGCTTTACGATGCACTCACTCACCATTCAGATGGAAT
CTCCAGTTGACCAGGACCCCGACTGCCTTTTCTGTGAAGACCCCTGTGACTAG

Translation (320 aa):
MYHCHSGSKPTEKGANEYAYAKWKLCSASAICFIFMIAEVVGGHIAGSLAVVTDAAHLLIDLTSFLLSLF
SLWLSSKPPSKRLTFGWHRAEILGALLSILCIWVVTGVLVYLACERLLYPDYQIQATVMIIVSSCAVAAN
IVLTVVLHQRCLGHNHKEVQANASVRAAFVHALGDLFQSISVLISALIIYFKPEYKIADPICTFIFSILV
LASTITILKDFSILLMEGVPKSLNYSGVKELILAVDGVLSVHSLHIWSLTMNQVILSAHVATAASRDSQV
VRREIAKALSKSFTMHSLTIQMESPVDQDPDCLFCEDPCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH