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Report for CCDS48002.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48002.2 Public Homo sapiens 9 PALM2AKAP2 24 110 108 CCDS HistoryNCBI Gene:445815Re-query CCDS DB by CCDS ID:48002.2Re-query CCDS DB by GeneID:445815See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 48002.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 48002.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314527.9 ENSP00000323805.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000314527.9Link to Ensembl Protein Viewer:ENSP00000323805.4Re-query CCDS DB by Nucleotide ID:ENST00000314527Re-query CCDS DB by Protein ID:ENSP00000323805
Original member Current member NCBI NM_053016.6 NP_443749.5 Accepted alive Link to Nucleotide Sequence:NM_053016.6Link to Protein Sequence:NP_443749.5Re-query CCDS DB by Nucleotide ID:NM_053016Re-query CCDS DB by Protein ID:NP_443749Link to BLAST:NP_443749.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443749.5 411 Q9Y2D5-8 411 100% 0 0

Chromosomal Locations for CCDS 48002.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109780489 109780533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109867491 109867571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109880551 109880681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109923735 109923849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109925061 109925082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109931927 109932028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109942686 109943425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGCAGAGGCGGAATTGCACAAGGAAAGGCTGCAAGCCATAGCAGAAAAAAGAAAGAGGCAGACTGAAA
TAGAAGGCAAGCGACAACAGCTTGACGAGCAGATACTTCTGCTGCAGCATTCCAAGTCCAAAGTGCTTCG
GGAGAAATGGCTGCTGCAGGGCATACCCGCTGGAACTGCCGAAGAGGAGGAAGCCAGGAGGCGGCAGTCT
GAAGAGGATGAGTTCAGAGTCAAGCAACTTGAAGATAACATTCAGAGGCTGGAGCAAGAAATACAAACGC
TAGAAAGTGAAGAGTCCCAGATATCTGCCAAAGAGCAAATCATCCTAGAGAAACTGAAGGAAACAGAAAA
ATCCTTCAAGGACTTTCAGAAGGGTTTCTCCAGTACGGATGGAGATGCAGTAAATTACATTTCCTCCCAG
CTTCCCGACCTGCCAATCCTCTGTTCACGAACAGCAGAACCATCACCTGGGCAGGACGGGACCAGCAGAG
CGGCTGCTGTGTACGCCATGGAAATTAATGTGGAGAAAGACAAACAAACAGGAGAGACCAAGATTCTCTC
TACATCTACCATTGGCCCAGAGGGGGTCCATCAGAAAGGAGTCAAAGTCTATGATGATGGTACCAAAGTA
GTGTATGAGGTGCGCTCAGGAGGCACCGTAGTAGAAAATGGAGTGCACAAATTAAGCACAAAGGATGTAG
AAGAGCTTATTCAGAAGGCTGGACAATCAAGCTTAGGAGGAGGGCACGTGTCTGAAAGGACTGTGATTGC
AGATGGGAGCCTCAGCCATCCCAAGGAACACATGCTCTGCAAAGAAGCTAAGTTAGAAATGGTACATAAG
TCTAGGAAAGACCATTCTTCCGGGAACCCAGGGCAGCAGGCCCAAGCCCCCAGCGCTGCAGGGCCGGAGG
CAAACTTGGATCAGCCCGTCACCATGATTTTTATGGGCTACCAAAATATCGAGGATGAAGAGGAGACGAA
AAAGGTGCTAGGCTATGATGAAACCATCAAGGCTGAATTGGTCCTCATTGATGAAGATGATGAGAAGTCA
TTGAGGGAGAAGACAGTGACGGACGTGTCCACTATTGACGGGAACGCGGCTGAGCTTGTGTCCGGGAGGC
CGGTCTCAGACACCACAGAGCCCTCATCCCCAGAAGGGAAGGAAGAGAGCCTAGCTACAGAGCCAGCCCC
AGGTACCCAAAAGAAAAAGCGCTGTCAATGCTGTGTTGTCATGTGA

Translation (411 aa):
MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQILLLQHSKSKVLREKWLLQGIPAGTAEEEEARRRQS
EEDEFRVKQLEDNIQRLEQEIQTLESEESQISAKEQIILEKLKETEKSFKDFQKGFSSTDGDAVNYISSQ
LPDLPILCSRTAEPSPGQDGTSRAAAVYAMEINVEKDKQTGETKILSTSTIGPEGVHQKGVKVYDDGTKV
VYEVRSGGTVVENGVHKLSTKDVEELIQKAGQSSLGGGHVSERTVIADGSLSHPKEHMLCKEAKLEMVHK
SRKDHSSGNPGQQAQAPSAAGPEANLDQPVTMIFMGYQNIEDEEETKKVLGYDETIKAELVLIDEDDEKS
LREKTVTDVSTIDGNAAELVSGRPVSDTTEPSSPEGKEESLATEPAPGTQKKKRCQCCVVM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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