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Report for CCDS19937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19937.1 Public Mus musculus 6 Aass 23 108 98 CCDS HistoryNCBI Gene:30956Re-query CCDS DB by CCDS ID:19937.1Re-query CCDS DB by GeneID:30956See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031707.13 ENSMUSP00000031707.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031707.13Link to Ensembl Protein Viewer:ENSMUSP00000031707.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031707Re-query CCDS DB by Protein ID:ENSMUSP00000031707
Original member Current member NCBI NM_013930.4 NP_038958.2 Accepted alive Link to Nucleotide Sequence:NM_013930.4Link to Protein Sequence:NP_038958.2Re-query CCDS DB by Nucleotide ID:NM_013930Re-query CCDS DB by Protein ID:NP_038958Link to BLAST:NP_038958.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038958.2 926 Q99K67 926 100% 0 0

Chromosomal Locations for CCDS 19937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 23072972 23073090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23074528 23074704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23075162 23075250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23075741 23075856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23077079 23077174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23078828 23078995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23091199 23091339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23092265 23092373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23092464 23092574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23093896 23094022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23094190 23094311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23096826 23096893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23097143 23097202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23107140 23107251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23107617 23107739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23109427 23109575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23113426 23113553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23113676 23113754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23114841 23114987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23115088 23115155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23118670 23118754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23120877 23121053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23122513 23122722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGCTGAGAGCGCAGAGGCCGAGACTGGCCAGGCTTAGAGCCTGCCTCTCCAGAGGCCTCCACCACAAGC
CAGTGATGGCACTCCGGAGGGAGGACGTGAACGCCTGGGAGCGCAGGGCGCCTCTGGCTCCCAAGCACAT
CAAGGGCATCACCAAACTGGGCTACAAGGTCTTGATACAGCCTTCCAACAGACGGGCCATCCATGACAAG
GAGTATGTCAGGGCTGGTGGCATTCTTCAGGAAGACATCACAGAAGCCTGTCTGATTTTGGGAGTAAAAA
GGCCTCCAGAGGAAAAACTGATGTCCAAGAAGACGTACGCCTTCTTTTCCCACACAATAAAAGCTCAGGA
AGCCAATATGAACCTGTTGGATGAGGTTCTGAAACAGGAAATCCGGCTCATTGATTATGAGAAAATGGTG
GATCACAGAGGGTCTCGGATAGTGGCTTTCGGACAGTGGGCGGGTGTGGCAGGAATGATTAATATTTTAC
ATGGAATGGGCTTAAGGCTCCTTGCTTTGGGACATCATACGCCTTTTATGCATCTTGGCATGGCTCACAA
CTACAGGAACAGCAGCCAGGCCGTGCAGGCTGTCCGTGATGCTGGCTATGAAATATCTCTGGGTTTAATG
CCAAAGTCAATAGGACCCTTAACGTTTGTCTTCACAGGGACTGGCAATGTATCCAAGGGAGCCCAGGAAG
TCTTTAATGAGCTACCTTGTGAGTATGTGGAGCCCCACGAATTAAGAGAAGTTTCAAAAACTGGAGACCT
CAGGAAAGTGTATGGGACGGTGTTAAGTCGCCATCATCATCTTGTCAGGAAAACAGATGGTGTGTACGAT
CCCGTAGAATACGAGAAATATCCTGAGCGCTACACAAGTCGTTTTAATACAGATATTGCGCCCTATACAA
CTTGTTTAATTAATGGAATCTACTGGGAGCAAAACACCCCTCGCCTGCTCACACGTCAGGATGCTCAGAG
TCTCCTGGTCCCAGTGAAGTCCTCAGTTGTTCCTGTTGAAGGATGTCCTGAATTACCACACAAACTTGTG
GCAATATGTGACATTTCAGCAGACACGGGAGGGTCCATAGATTTTATGACTGAGTGCACCACCATAGAAC
GGCCCTTTTGCATGTATGACGCAGACCAGCAAATTATTCACGACAGTGTTGAAGGCTCCGGGATCCTGAT
GTGTTCCATTGACAATTTGCCAGCACAGCTTCCAATCGAGGCTACGGAATACTTTGGAGACATGCTTTAC
CCTTATGTTGAAGAAATGTTGTTATCCGATGCATCACAACCTCTGGAAAGCCAGAACTTCTCCCCAGTGG
TGCGAGACGCAGTGATTACGTCCAATGGTCTATTGACTGACAAATACAAATATATACAGAAACTCCGAGA
AAGCAGAGAACGCATTCAATTCCTTTCAATGAGTACCAAGAAGAAGGTTTTGGTCCTTGGGTCTGGCTAT
GTATCTGGGCCTGTTTTGGAATATCTGTCAAGAGACAACAATATAGAAATAACACTAGGCTCTGACATGA
CCAACCAAATGCAGCAGCTGAGCAAGAAATACAACATTAACCCTGTCAGTTTGACTGTTGGCAAGCAAGA
GGCAAAGCTGCAATCCCTGGTGGAATCCCAGGATCTTGTGATCAGCTTGTTGCCTTATGTGCTTCATCCT
GTGGTGGCCAAAGCCTGCATCGAAAGCAGGGTTAATATGGTCACTGCAAGCTATATTACACCAGCCATGA
AAGAACTGGAAAAGAGTGTGGATGATGCTGGCATTACAGTCATTGGTGAGTTGGGATTAGACCCTGGTCT
TGATCACATGTTGGCAATGGAAACAATTGATACTGCCAAAGAGCTGGGAGCCACGGTTGAGTCTTATGTT
TCCTACTGTGGTGGCCTTCCGGCCCCTGAACATTCAGATAATCCCTTGCGATACAAATTCAGCTGGAGTC
CAGTGGGAGTCTTGATGAACATAATGCAGCCTGCTAGCTATCTGCTCAATGGGAAGGTTGTGAATGTGAC
AGGGGGAGTCTCTTTTCTCAACTCTGTCACACCCATGGATTACTTCCCAGGTCTAAACTTGGAAGGCTAT
CCTAACAGAGATAGCATAAAATATGCTGAGATTTATGGAATTTCATCTGCCCATACATTATTAAGGGGAA
CACTGAGATATAAGGGATATTCCAAAGCCTTGAATGGATTTGTGAAGTTGGGACTCATCAACAGAGAAGC
ATACCCTGCCCTCCGACCTGAGGCCAACCCTCTCACCTGGAAACAACTCCTATGTGACCTAGTTGGAATT
TCCCGCTCCTCCCCATGCGAGAAGCTTAAGGAAGTTGTCTTCACAAAGCTGGGAGGGGACAATACCCAGC
TGGAAGCTGCAGAATGGTTGGGCTTACTGGGGGATGAACAAGTTCCTCAGGCGGAGTCCATTGTGGACGC
GTTCTCCAAGCACTTGGTCTCAAAACTCTCCTATGGCCCTGAAGAAAAGGATATGATTGTGATGAGGGAC
AGCTTTGGCATCAGACATCCATCTGGACATTTAGAAAATAAGACCATTGATCTCGTGGTTTATGGAGACT
TCAACGGCTTCTCGGCAATGGCTAAAACTGTGGGGTTGCCGACAGCCATGGCAGCCAAAATGTTGCTTGA
TGGTGAAATTGAAGCCAAAGGCCTAATGGGGCCCTTTACAAAGGAGATCTATGGGCCAATATTGGAGCGG
ATTAAAGCAGAAGGCATTGTATTTAACACACAGAGTACAATCAAGCTATAA

Translation (926 aa):
MLRAQRPRLARLRACLSRGLHHKPVMALRREDVNAWERRAPLAPKHIKGITKLGYKVLIQPSNRRAIHDK
EYVRAGGILQEDITEACLILGVKRPPEEKLMSKKTYAFFSHTIKAQEANMNLLDEVLKQEIRLIDYEKMV
DHRGSRIVAFGQWAGVAGMINILHGMGLRLLALGHHTPFMHLGMAHNYRNSSQAVQAVRDAGYEISLGLM
PKSIGPLTFVFTGTGNVSKGAQEVFNELPCEYVEPHELREVSKTGDLRKVYGTVLSRHHHLVRKTDGVYD
PVEYEKYPERYTSRFNTDIAPYTTCLINGIYWEQNTPRLLTRQDAQSLLVPVKSSVVPVEGCPELPHKLV
AICDISADTGGSIDFMTECTTIERPFCMYDADQQIIHDSVEGSGILMCSIDNLPAQLPIEATEYFGDMLY
PYVEEMLLSDASQPLESQNFSPVVRDAVITSNGLLTDKYKYIQKLRESRERIQFLSMSTKKKVLVLGSGY
VSGPVLEYLSRDNNIEITLGSDMTNQMQQLSKKYNINPVSLTVGKQEAKLQSLVESQDLVISLLPYVLHP
VVAKACIESRVNMVTASYITPAMKELEKSVDDAGITVIGELGLDPGLDHMLAMETIDTAKELGATVESYV
SYCGGLPAPEHSDNPLRYKFSWSPVGVLMNIMQPASYLLNGKVVNVTGGVSFLNSVTPMDYFPGLNLEGY
PNRDSIKYAEIYGISSAHTLLRGTLRYKGYSKALNGFVKLGLINREAYPALRPEANPLTWKQLLCDLVGI
SRSSPCEKLKEVVFTKLGGDNTQLEAAEWLGLLGDEQVPQAESIVDAFSKHLVSKLSYGPEEKDMIVMRD
SFGIRHPSGHLENKTIDLVVYGDFNGFSAMAKTVGLPTAMAAKMLLDGEIEAKGLMGPFTKEIYGPILER
IKAEGIVFNTQSTIKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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