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Report for CCDS28069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28069.1 Public Mus musculus 16 Crygs 23 108 98 CCDS HistoryNCBI Gene:12970Re-query CCDS DB by CCDS ID:28069.1Re-query CCDS DB by GeneID:12970See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040592.5 ENSMUSP00000043588.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040592.5Link to Ensembl Protein Viewer:ENSMUSP00000043588.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040592Re-query CCDS DB by Protein ID:ENSMUSP00000043588
Original member Current member NCBI NM_009967.2 NP_034097.1 Accepted alive Link to Nucleotide Sequence:NM_009967.2Link to Protein Sequence:NP_034097.1Re-query CCDS DB by Nucleotide ID:NM_009967Re-query CCDS DB by Protein ID:NP_034097Link to BLAST:NP_034097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034097.1 178 O35486 178 100% 0 0

Chromosomal Locations for CCDS 28069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22805319 22805591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22806426 22806668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22811335 22811355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGTCTAAAACTGGAGGCAAGATTAGTTTCTACGAAGACCGAAATTTTCAAGGCCGCCGCTATGACTGCG
ACTGCGACTGCGCAGACTTCCGCTCGTACCTAAGTCGCTGCAACTCCATTAGAGTAGAGGGAGGCACCTG
GGCTGTGTATGAAAGGCCCAACTTCTCCGGGCACATGTACATCTTACCCCAGGGCGAGTACCCTGAATAC
CAGCGTTGGATGGGCCTTAATGACCGCCTGGGCTCTTGCCGAGCTGTTCATCTGTCTAGCGGAGGCCAGG
CTAAGATTCAGGTCTTTGAAAAGGGCGACTTCAACGGTCAGATGTACGAAACCACGGAAGACTGTCCTTC
TATCATGGAGCAGTTTCACCTGCGAGAGATTCATTCCTGTAAGGTGGTAGAAGGCACCTGGATTTTCTAT
GAGCTACCCAACTACCGTGGCAGACAGTATCTTCTGGATAAGAAGGAGTACCGGAAGCCCGTCGATTGGG
GTGCGGCATCCCCCGCTATCCAGTCGTTCCGCCGCATTGTGGAGTGA

Translation (178 aa):
MSKTGGKISFYEDRNFQGRRYDCDCDCADFRSYLSRCNSIRVEGGTWAVYERPNFSGHMYILPQGEYPEY
QRWMGLNDRLGSCRAVHLSSGGQAKIQVFEKGDFNGQMYETTEDCPSIMEQFHLREIHSCKVVEGTWIFY
ELPNYRGRQYLLDKKEYRKPVDWGAASPAIQSFRRIVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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