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Report for CCDS6504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6504.1 Public Homo sapiens 9 IFNA6 24 110 108 CCDS HistoryNCBI Gene:3443Re-query CCDS DB by CCDS ID:6504.1Re-query CCDS DB by GeneID:3443See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6504.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380210.2 ENSP00000369558.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380210.2Link to Ensembl Protein Viewer:ENSP00000369558.1Re-query CCDS DB by Nucleotide ID:ENST00000380210Re-query CCDS DB by Protein ID:ENSP00000369558
Original member Current member NCBI NM_021002.2 NP_066282.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021002.2Link to Protein Sequence:NP_066282.1Re-query CCDS DB by Nucleotide ID:NM_021002Re-query CCDS DB by Protein ID:NP_066282Link to BLAST:NP_066282.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066282.1 189 P05013 189 100% 0 0

Chromosomal Locations for CCDS 6504.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21350318 21350887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGCTTTGCCTTTTGCTTTACTGATGGCCCTGGTGGTGCTCAGCTGCAAGTCAAGCTGCTCTCTGGACT
GTGATCTGCCTCAGACCCACAGCCTGGGTCACAGGAGGACCATGATGCTCCTGGCACAAATGAGGAGAAT
CTCTCTTTTCTCCTGTCTGAAGGACAGACATGACTTCAGATTTCCCCAGGAGGAGTTTGATGGCAACCAG
TTCCAGAAGGCTGAAGCCATCTCTGTCCTCCATGAGGTGATTCAGCAGACCTTCAACCTCTTCAGCACAA
AGGACTCATCTGTTGCTTGGGATGAGAGGCTTCTAGACAAACTCTATACTGAACTTTACCAGCAGCTGAA
TGACCTGGAAGCCTGTGTGATGCAGGAGGTGTGGGTGGGAGGGACTCCCCTGATGAATGAGGACTCCATC
CTGGCTGTGAGAAAATACTTCCAAAGAATCACTCTCTACCTGACAGAGAAAAAGTACAGCCCTTGTGCCT
GGGAGGTTGTCAGAGCAGAAATCATGAGATCCTTCTCTTCATCAAGAAACTTGCAAGAAAGGTTAAGGAG
GAAGGAATAA

Translation (189 aa):
MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFRFPQEEFDGNQ
FQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLEACVMQEVWVGGTPLMNEDSI
LAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRNLQERLRRKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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