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Report for CCDS24985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24985.1 Public Mus musculus 11 Smtnl2 23 108 98 CCDS HistoryNCBI Gene:276829Re-query CCDS DB by CCDS ID:24985.1Re-query CCDS DB by GeneID:276829See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050226.6 ENSMUSP00000059043.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050226.6Link to Ensembl Protein Viewer:ENSMUSP00000059043.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050226Re-query CCDS DB by Protein ID:ENSMUSP00000059043
Original member Current member NCBI NM_177776.3 NP_808444.1 Accepted alive Link to Nucleotide Sequence:NM_177776.3Link to Protein Sequence:NP_808444.1Re-query CCDS DB by Nucleotide ID:NM_177776Re-query CCDS DB by Protein ID:NP_808444Link to BLAST:NP_808444.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808444.1 456 Q8CI12 456 100% 0 0

Chromosomal Locations for CCDS 24985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72391287 72391413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72399874 72400025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72400329 72400446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72401348 72401527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72402425 72402500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72403011 72403250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72403917 72404004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72411244 72411633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGAGCCGTCCCCCGACGCCGAGGAGGCGCACACAGTGCGCGAGGCGCTGGGCCGCTACGAGGCGGCGC
TGGAGGGTGCGGTGCGTGCGCTGCACGAGGACATGCAGGGGCTGCAGCGCGGCGTGGAGCGGCGCGTGGC
AGAGGCGCTGCGCCTGGCCGGCCCCTTGGCTCGTACTGTGGCCGAGCTGCAGCGGGACAACCAGCGGCTG
CAGGCACAGCTCGAACGCTTGACGCGCCAGGTGGAGGCGCTGGGCTTGGCGACTGGAGTGTCCCCTGCAC
CCGGCACGCCCAGTCCCCCTCCGGCGGCCACAGTTACCGACCGCGCCCCCCGCTTGGGCACTGCACGCTT
CTCCAGTCATGCCACCTTTTCGCTGTCCGGTCGAAGCCCGAGCGTGGAACATGATGAAGCCAGTGACCTT
GAGGTGAGACGTGCTTCAAATTCATGCATCTTGGAGAACGGACACCAGCTGGATGCAGGTCCAGCCAACG
GATCCTCTGAGGTCCAAACCTCGTCAGCCCAGGAGCCCCCGAGGCCACGCCCTGTGAGCCTCTCCTTGCG
GATGCCCCACCAGCCCGTCACAGCTGTCACCCGAGTCTCCGAGAAATTCTCTGGGGAGACCTCAGCTTCA
GCTCTGTCACCCACATCTGCTGCCATTGTGGGGGGCTTCACCCCAAGCCCTAGTGAGGCCATCAGCCCTT
GGACTCCCAGTCCCACTGAGAAAAGTTCCTCTTTCACTCGGTCTTTGTCTGGCTCTGGGTATGGAGCAGT
GACGGCTGGCAAACGCAAGGACAGCCCTCCACTGGTGACCCCACCACAGTCACCCCCATCCTCGCAGCCC
CCAGCTATGACTCAGGCCCCTCGCCAGGGAGAGCGTCGCAGGGAACTGGTGAGGTCGCAGACGCTGCCTC
GGACTTCAGGGGCACAGGCTCGAAAGGCGCTGTTTGAGAAGTGGGAGCAGGATACGGCGAGCAAGGGCAA
AGGTGAGACCAGGGCCAAACTAAAAAGGTCACAGAGTTTCGGTGTGGCCAGTGCCAGCAGCATCAAACAG
ATCCTGCTAGAGTGGTGCCGCAGCAAGACTGTGGGCTATCAGCACGTGGACCTGCAGAATTTCTCCTCCA
GCTGGAGTGACGGCATGGCCTTCTGTGCCCTGGTGCACTCCTTCTTCCCTGATGCCTTCGACTACAATGC
CCTGAGTCCCACACAAAGGCAGAAGAACTTCGAACTGGCCTTCACCATGGCTGAGAATCTGGCCAACTGT
GAGCGCCTCATTGAAGTGGAGGATATGATGGTGATGGGCCGCAAGCCGGACCCCATGTGTGTCTTCACCT
ATGTGCAGTCGCTCTACAACCACCTTCGTCGCTTTGAGTAA

Translation (456 aa):
MEPSPDAEEAHTVREALGRYEAALEGAVRALHEDMQGLQRGVERRVAEALRLAGPLARTVAELQRDNQRL
QAQLERLTRQVEALGLATGVSPAPGTPSPPPAATVTDRAPRLGTARFSSHATFSLSGRSPSVEHDEASDL
EVRRASNSCILENGHQLDAGPANGSSEVQTSSAQEPPRPRPVSLSLRMPHQPVTAVTRVSEKFSGETSAS
ALSPTSAAIVGGFTPSPSEAISPWTPSPTEKSSSFTRSLSGSGYGAVTAGKRKDSPPLVTPPQSPPSSQP
PAMTQAPRQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTASKGKGETRAKLKRSQSFGVASASSIKQ
ILLEWCRSKTVGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNALSPTQRQKNFELAFTMAENLANC
ERLIEVEDMMVMGRKPDPMCVFTYVQSLYNHLRRFE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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