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Report for CCDS50867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50867.1 Public Mus musculus 3 Sirpb1b 23 108 98 CCDS HistoryNCBI Gene:668101Re-query CCDS DB by CCDS ID:50867.1Re-query CCDS DB by GeneID:668101See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50867.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091319.6 ENSMUSP00000088869.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091319.6Link to Ensembl Protein Viewer:ENSMUSP00000088869.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091319Re-query CCDS DB by Protein ID:ENSMUSP00000088869
Original member Current member NCBI NM_001173460.1 NP_001166931.1 Accepted alive Link to Nucleotide Sequence:NM_001173460.1Link to Protein Sequence:NP_001166931.1Re-query CCDS DB by Nucleotide ID:NM_001173460Re-query CCDS DB by Protein ID:NP_001166931Link to BLAST:NP_001166931.1

Chromosomal Locations for CCDS 50867.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 15503104 15503216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15542158 15542472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15542936 15543253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15548591 15548947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15574878 15574950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGCTTCTCCTAGATGCCTGGACCCACATTCCTCATAGTGTCCTGCTGTTGATCCTGCTTCTGGGACTTA
AAGGAGCAGCTATGAGAGAGCTGAAGGTGATCCAACCTGTTAAATCATTTTTTGTTGGTGCTGGAGGGTC
AGCCACTCTGAACTGCACAGTGACATCCCTCCTCCCTGTGGGGCCCATAAGGTGGTACAGGGGTGTAGGA
CAAAGTCGACTCTTGATACAGTCGTTCACAGGAGAACATTTCCCCCGAATAACAAGTGTTTCAGATGTTA
CAAAGAGAAACAACCTGGACTTTTCCATCCGTATCAGTAATGTCACTCCTGCTGATTCGGGTACCTATTA
CTGTGTGAAGTTCCAGAGAGGATCATCAGAGTCTGACAGAGAGATTCAGTCTGGAGGTGGCACTGAGTTG
TCAGTACTTGCTAAACCATCTTCACCTATGGTCTCCGGTCCTGCAGCCAGAGCTGTCCCTAAGCAGACAG
TGACCTTTACATGCAGATCCCATGGATTCTTTCCGCGGAACCTCACGCTGAAGTGGTTCAAGAATGGAAA
TGAGATCTCTCACTTGGAAACTTCTGTGGAACCCGAAGAAACAAGTGTCTCCTATAGAGTTTCCAGCACA
GTCCAGGTGGTGTTGGAACCTAGGGATGTCCGCTCTCAGATCATTTGTGAAGTGGATCATGTCACTTTAG
ATCGAGCCCCTCTCAGAGGGATTGCTCACATCTCTGAGTTCATTCAAGTTCCACCCACCCTGGAGATCAG
CCAGCAGCCAACAATGGTATGGAATGTGATAATTGTCACCTGCCAAATACAGAAGTTCTATCCTCCAAGG
TTTCAGGTGACCTGGTTAGAGAATGGAAATATATCCCGGAGAGAAGTACCTTTTACACTTATAGTAAACA
AGGATGGAACTTACAACTGGATCAGCTGTCTCTTGGTGAACATATCTGCCCTTGAGGAGAACATGGTAGT
GACATGCCAGGTTGAGCATGATGGACAAGCAGAAGTCATTGAAACCCATACTGTGGTGGTCACTGAACAT
CAGAGAGTGAAAGAACTGAAGACGGCAGGTATTGCTAAAATACCTGTAGCTGTGCTCCTTGGATCCAAAA
TACTGCTGTTAATTGCTGCCACTGTCATTTACATGCATAAGAAGCAAAATGCCTGA

Translation (391 aa):
MLLLDAWTHIPHSVLLLILLLGLKGAAMRELKVIQPVKSFFVGAGGSATLNCTVTSLLPVGPIRWYRGVG
QSRLLIQSFTGEHFPRITSVSDVTKRNNLDFSIRISNVTPADSGTYYCVKFQRGSSESDREIQSGGGTEL
SVLAKPSSPMVSGPAARAVPKQTVTFTCRSHGFFPRNLTLKWFKNGNEISHLETSVEPEETSVSYRVSST
VQVVLEPRDVRSQIICEVDHVTLDRAPLRGIAHISEFIQVPPTLEISQQPTMVWNVIIVTCQIQKFYPPR
FQVTWLENGNISRREVPFTLIVNKDGTYNWISCLLVNISALEENMVVTCQVEHDGQAEVIETHTVVVTEH
QRVKELKTAGIAKIPVAVLLGSKILLLIAATVIYMHKKQNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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