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Report for CCDS25297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25297.1 Public Mus musculus 11 Hoxb4 23 108 98 CCDS HistoryNCBI Gene:15412Re-query CCDS DB by CCDS ID:25297.1Re-query CCDS DB by GeneID:15412See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25297.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049241.8 ENSMUSP00000048002.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049241.8Link to Ensembl Protein Viewer:ENSMUSP00000048002.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049241Re-query CCDS DB by Protein ID:ENSMUSP00000048002
Original member Current member NCBI NM_010459.7 NP_034589.3 Accepted alive Link to Nucleotide Sequence:NM_010459.7Link to Protein Sequence:NP_034589.3Re-query CCDS DB by Nucleotide ID:NM_010459Re-query CCDS DB by Protein ID:NP_034589Link to BLAST:NP_034589.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034589.3 250 P10284 250 100% 0 0

Chromosomal Locations for CCDS 25297.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96318770 96319223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96320030 96320328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCTATGAGTTCCTTTTTGATCAACTCAAACTATGTCGACCCCAAGTTCCCTCCGTGCGAGGAGTATT
CACAGAGCGATTACCTACCCAGCGACCACTCGCCCGGGTACTACGCCGGCGGCCAGAGGCGAGAGAGCGG
CTTCCAGCCGGAGGCGGCCTTTGGGCGCCGGGCGCCGTGCACTGTGCAGCGCTACGCGGCCTGCCGAGAC
CCCGGGCCCCCGCCACCTCCGCCGCCCCCGCCGCCCCCGCCACCGCCCGGGCTGTCCCCTCGGGCTCCAG
TGCAGCCAACAGCCGGGGCCCTCCTCCCGGAGCCCGGGCAGCGCAGCGAGGCGGTCAGCAGCAGCCCCCC
GCCGCCTCCCTGCGCCCAGAACCCCCTGCATCCCAGCCCGTCCCACTCCGCGTGCAAAGAGCCCGTCGTC
TACCCCTGGATGCGCAAAGTTCACGTGAGCACGGTAAACCCCAATTACGCCGGCGGGGAGCCCAAGCGCT
CTCGGACCGCCTACACTCGCCAGCAGGTCCTGGAGTTGGAGAAGGAGTTTCACTACAATCGCTACCTGAC
GCGCCGCCGGAGGGTGGAGATCGCCCACGCGCTCTGCCTGTCCGAGCGCCAGATCAAGATCTGGTTCCAG
AATCGGCGCATGAAGTGGAAAAAAGACCACAAGTTGCCCAACACCAAGATCCGCTCGGGTGGCACCGCGG
GCGCAGCCGGAGGCCCCCCTGGCCGGCCCAACGGAGGCCCCCCTGCGCTCTAG

Translation (250 aa):
MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESGFQPEAAFGRRAPCTVQRYAACRD
PGPPPPPPPPPPPPPPGLSPRAPVQPTAGALLPEPGQRSEAVSSSPPPPPCAQNPLHPSPSHSACKEPVV
YPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQ
NRRMKWKKDHKLPNTKIRSGGTAGAAGGPPGRPNGGPPAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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