NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30520.1 Public Mus musculus X Pir 23 108 98 CCDS HistoryNCBI Gene:69656Re-query CCDS DB by CCDS ID:30520.1Re-query CCDS DB by GeneID:69656See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30520.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033749.8 ENSMUSP00000033749.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033749.8Link to Ensembl Protein Viewer:ENSMUSP00000033749.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033749Re-query CCDS DB by Protein ID:ENSMUSP00000033749
Original member Current member NCBI NM_027153.3 NP_081429.1 Accepted alive Link to Nucleotide Sequence:NM_027153.3Link to Protein Sequence:NP_081429.1Re-query CCDS DB by Nucleotide ID:NM_027153Re-query CCDS DB by Protein ID:NP_081429Link to BLAST:NP_081429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081429.1 290 Q9D711 290 100% 0 0

Chromosomal Locations for CCDS 30520.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 164271636 164271731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164280129 164280221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164295915 164295998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164300224 164300430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164330015 164330099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164342474 164342518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164358148 164358230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164369046 164369112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164372453 164372565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGCATCCTCTAAAAAGGTTACTCTCTCAGTGCTCAGCCGGGAGCAGTCAGAGGGGGTAGGAGCACGTG
TGCGCAGAAGCATTGGCAGACCCGAGTTGAAAAATCTGGATCCATTTTTACTGTTTGATGAATTTAAAGG
AGGAAAGCCGGGAGGATTTCCTGATCATCCACACCGAGGATTTGAAACAGTATCTTATCTTCTGGAAGGG
GGCAGCATGGCCCATGAAGACTTTTGTGGACATGTTGGTAAAATGAACCCAGGAGACCTACAGTGGATGA
CTGCAGGACGAGGCATTCTGCATGCTGAGATGCCCTGCTCAGAGGAGCCAGCTCATGGCTTGCAGCTGTG
GGTGAATTTGAGACGCTCAGAAAAGATGGTGGCGCCTCAGTACCAGGAACTGAAAAGTGAAGAGATCCCG
AAACCCACCAAAGATGGTGTGACAGTTGCTGTCATTTCAGGAGAAGCCTTGGGAATAAAGTCGAAGGTTT
ACACTCGCACACCAACCTTATATCTGGACTTCAAGTTGGACCAAGGAGCAAAGCATTCCCAGCCTATTCC
TAAAGGGTGGACAAGCTTCATTTATACCATCTCTGGAGATGTATATATTGGGCCTGATGATGCTCAACAA
AAGATAGAACCACATCACACAGCAGTCCTTGGAGAAGGTGACGCTGTCCAGTTGGAAAATAAGGACCCCA
AAAGAAGCCATTTTGTCTTAATTGCTGGGGAGCCATTAAGAGAACCAGTTGTCCAACATGGTCCATTTGT
GATGAATACCAATGAGGAAATTTCTCAGGCCATTCTTGATTTCAGAAATGCAAAAAATGGTTTTGAGGGG
GCCAGAACCTGGAAGTCAAAGATTGGAAACTAA

Translation (290 aa):
MASSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGKPGGFPDHPHRGFETVSYLLEG
GSMAHEDFCGHVGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRRSEKMVAPQYQELKSEEIP
KPTKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDQGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQ
KIEPHHTAVLGEGDAVQLENKDPKRSHFVLIAGEPLREPVVQHGPFVMNTNEEISQAILDFRNAKNGFEG
ARTWKSKIGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH