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Report for CCDS17212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17212.1 Public Mus musculus 2 Zbtb46 23 108 98 CCDS HistoryNCBI Gene:72147Re-query CCDS DB by CCDS ID:17212.1Re-query CCDS DB by GeneID:72147See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087409.9 ENSMUSP00000084672.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087409.9Link to Ensembl Protein Viewer:ENSMUSP00000084672.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087409Re-query CCDS DB by Protein ID:ENSMUSP00000084672
Original member Current member NCBI NM_028125.3 NP_082401.1 Accepted alive Link to Nucleotide Sequence:NM_028125.3Link to Protein Sequence:NP_082401.1Re-query CCDS DB by Nucleotide ID:NM_028125Re-query CCDS DB by Protein ID:NP_082401Link to BLAST:NP_082401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082401.1 434 Q8BID6-2 434 100% 0 0

Chromosomal Locations for CCDS 17212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181411613 181411980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181423419 181424355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGAACAACCGAAAGGAAGATATGGAAATCACTTCTCACTACCGGCATCTGCTTCGAGAGCTCAATGAGC
AGAGGCAGCACGGAGTCCTCTGTGATGCGTGCGTCGTGGTGGAGGGCAAGGTCTTCAAGGCACATAAGAA
CGTCTTGCTTGGGAGCAGCCGCTACTTTAAGACGCTCTACTGCCAGGTACAGAAGACATCTGACCAGGCC
ACCGTCACTCACTTGGACATTGTTACAGCCCAGGGCTTCAAGGCCATTATTGACTTCATGTACTCCGCCC
ATCTGGCTCTCACTAGTAGGAATGTCATCGAGGTGATGTCAGCTGCCAGCTTCCTACAGATGACTGACAT
TGTGCAGGCCTGCCATGATTTCATCAAGGCTGCACTGGACATCAGCATAAAGTCAGATGCCTCCGATGAA
CTCTCAGAATTTGAGATTGGCACCCCAGCCAGCAACAGTACAGAGGCGTTGATCTCAGCTGTGATGGCTG
GAAGGAGTATCTCCCCATGGTTGGCTCGGAGAACAAGTCCTGCCAATTCTTCTGGAGACTCTGCCATTGC
CAGCTGTCATGAAGGAGGAAGCAGCTATGGGAAGGAGGACCAGGAACCCAAAGCTGATGGCCCTGATGAC
GTTTCTTCACAGTCTTTGTGGCCTGGAGATGTAGGCTATGGGTCTCTGCGCATCAAGGAAGAACAGATTT
CACCATCACATTATGGAGGGAGTGAGCTTCCATCTTCCAAGGACACTGCAATACAGAATTCTTTATCAGA
ACAGGGTTCTGGGGATGGCTGGCAGCCCACAGGCCGGAGGAAGAATCGGAAAAACAAAGAGACTGTCCGA
CACATCACCCAGCAGGTGGAGGAGGACAGCCAGGCTGGCTCTCCAGTACCTTCATTCCTACCCACATCGG
GATGGCCTTTCAGCAGCCGAGACTCAAATGTAGACCTGACGGTCACTGAGGCCAGCAGCTTGGACAGCCG
AGGCGAGAGAGCAGAGCTCTATGCTCACATCGATGAGGGCCTACTAGGAGGAGAAACCAGCTACTTGGGC
CCACCCCTCACCCCAGAGAAGGAAGAAGCACTACACCAGGCTACTGCAGTGGCCAATCTTCGTGCTGCAC
TCATGAGTAAGAACAGTCTGCTGTCACTCAAGGCTGACGTGCTCGGTGATGATGGCTCACTTCTGTTCGA
GTACCTGCCCAAAGGTGCCCACTCACTGTCTCGTAAGTGCAAGTTCTGGTGTGTCACTGTGTCTTCCTTT
GGTTTAAGCACCTCAGTTCAGCCCTTCAGACCCTGGAGTCACTGA

Translation (434 aa):
MNNRKEDMEITSHYRHLLRELNEQRQHGVLCDACVVVEGKVFKAHKNVLLGSSRYFKTLYCQVQKTSDQA
TVTHLDIVTAQGFKAIIDFMYSAHLALTSRNVIEVMSAASFLQMTDIVQACHDFIKAALDISIKSDASDE
LSEFEIGTPASNSTEALISAVMAGRSISPWLARRTSPANSSGDSAIASCHEGGSSYGKEDQEPKADGPDD
VSSQSLWPGDVGYGSLRIKEEQISPSHYGGSELPSSKDTAIQNSLSEQGSGDGWQPTGRRKNRKNKETVR
HITQQVEEDSQAGSPVPSFLPTSGWPFSSRDSNVDLTVTEASSLDSRGERAELYAHIDEGLLGGETSYLG
PPLTPEKEEALHQATAVANLRAALMSKNSLLSLKADVLGDDGSLLFEYLPKGAHSLSRKCKFWCVTVSSF
GLSTSVQPFRPWSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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