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Report for CCDS26775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26775.1 Public Mus musculus 13 Slc38a9 23 108 98 CCDS HistoryNCBI Gene:268706Re-query CCDS DB by CCDS ID:26775.1Re-query CCDS DB by GeneID:268706See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052514.5 ENSMUSP00000052172.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052514.5Link to Ensembl Protein Viewer:ENSMUSP00000052172.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052514Re-query CCDS DB by Protein ID:ENSMUSP00000052172
Original member Current member NCBI NM_178746.4 NP_848861.1 Accepted alive Link to Nucleotide Sequence:NM_178746.4Link to Protein Sequence:NP_848861.1Re-query CCDS DB by Nucleotide ID:NM_178746Re-query CCDS DB by Protein ID:NP_848861Link to BLAST:NP_848861.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848861.1 560 Q8BGD6 560 100% 0 0

Chromosomal Locations for CCDS 26775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 112669622 112669731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112686066 112686198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112689273 112689394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112689522 112689585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112690159 112690252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112695241 112695411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112697985 112698044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112701457 112701651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112703538 112703645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112714141 112714247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112723198 112723311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112726047 112726195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112729198 112729287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112731499 112731664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGCAAGTGTGGATGGTGATTCCAGGCATCTTCTCTCTGAGGTGGAACATGAAGTAAGCCCTGGGCCTA
TGAACATCCAGTTTGATTCATCAGATCTGAGATCTAAAAGGCCTTTCTATATAGAGCCTACCAACATTGT
CAATGTGAATGATGTCATTCAGAGGGTTAGTGACCATGCTGCTGCTATGAACAAGCGGATTCATTACTAC
AGCCGGCTCACCACTCCTGCAGACAAGGCACTGATTGCTCCAGACCATGTCGTCCCTGCTCCAGAGGAAT
GCTATGTGTATAGTCCATTGGGCTCTGCCTATAAACTCAAGAGTTACACTGAAGGCTATGGTAAAAACAC
CAGCTTAGTTACTATTTTTATGATTTGGAATACCATGATGGGAACATCTATACTAAGTATTCCTTGGGGC
ATAAAACAGGCTGGATTTACCACTGGGATGTGTGTCATCGTGCTGATGGGCCTTCTAACACTTTACTGCT
GCTATAGAGTGGTGAAGTCACGGAGTACGATAAGTACATCGGACACGAGTACCTGGGAATATCCAGATGT
CTGCAAACATTATTTTGGCTCCTTTGGGCAATGGTCAAGTCTCCTTTTCTCCTTGGTGTCGCTCATTGGA
GCAATGATAGTTTATTGGGTGCTTATGTCTAATTTTCTTTTTAATACTGGAAAGTTTATTTTTAATTTTA
TTCATCACATTAATGACACAGACACTGTACTGAGCACCAATAATAGCAACCCTGTGATATGTCCAAATGC
TGGCAGTGGTGGCCGTCCTGACAACAGTTCCATGATTTTCTACAACAACAACACAGAAGTGCAGCTGTTT
GAGAAGTGGTGGGACAAGTCCAGGACAGTGCCCTTCTACCTTATAGGGCTCCTCTTGCCGCTGCTCAACT
TCAAGTCTCCTTCATTCTTCTCCAAATTTAATATCCTGGGAACGGTGTCTGTCCTCTATTTGATTTTCGT
TGTTACCCTGAAGGCTGTTCGCTTAGGATTCCATCTGGAATTTCACTGGTTTGTGCCAACAGAATTTTTT
GTACCAGAGATAAGAGCTCAGTTTCCGCAGCTGATGGGGGTGCTTACTCTGGCCTTCTTTATTCACAACT
GCATCATCACACTCTTGAAAAACAACAAGAACCAAGAAAATAATGTGAGAGACCTATGCATTGCTTATAT
GCTGGTGACATTGACTTATCTCTATATTGGTATCCTGGTTTTTGCCTCATTCCCTTCGCCTCCATTACCC
AAAGATTGTATTGAACAGAACTTCTTAGACAACTTCCCCAGCAGTGACATCCTGTCCTTCATTGCAAGGA
TATTCCTGCTGTTCCAGATGATGACTGTATATCCGCTCTTAGGCTACTTGGCTCGTGTCCAGCTCTTGGG
CCATATCTTCGGTGACATTTATCCTAGCATTTTCCATGTGCTGATTCTTAACTTAGTTATTGTGGGAGCT
GGAGTGACCATGGCCTGTTTCTACCCAAACATAGGAGGGATCATAAGGTATTCGGGAGCAGCATGCGGCC
TGGCTTTCGTGTTCATATACCCGTCTCTCATCTATATAATCTCCCTTCACCAAGAGGAGCGTCTGACATG
GCCTAAGTTGGTGTTTCACGTTATCATCATCATTTTGGGCCTGGCGAACCTGATTGCTCAGTTTTTCATG
TGA

Translation (560 aa):
MASVDGDSRHLLSEVEHEVSPGPMNIQFDSSDLRSKRPFYIEPTNIVNVNDVIQRVSDHAAAMNKRIHYY
SRLTTPADKALIAPDHVVPAPEECYVYSPLGSAYKLKSYTEGYGKNTSLVTIFMIWNTMMGTSILSIPWG
IKQAGFTTGMCVIVLMGLLTLYCCYRVVKSRSTISTSDTSTWEYPDVCKHYFGSFGQWSSLLFSLVSLIG
AMIVYWVLMSNFLFNTGKFIFNFIHHINDTDTVLSTNNSNPVICPNAGSGGRPDNSSMIFYNNNTEVQLF
EKWWDKSRTVPFYLIGLLLPLLNFKSPSFFSKFNILGTVSVLYLIFVVTLKAVRLGFHLEFHWFVPTEFF
VPEIRAQFPQLMGVLTLAFFIHNCIITLLKNNKNQENNVRDLCIAYMLVTLTYLYIGILVFASFPSPPLP
KDCIEQNFLDNFPSSDILSFIARIFLLFQMMTVYPLLGYLARVQLLGHIFGDIYPSIFHVLILNLVIVGA
GVTMACFYPNIGGIIRYSGAACGLAFVFIYPSLIYIISLHQEERLTWPKLVFHVIIIILGLANLIAQFFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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