NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11096.1 Public Homo sapiens 17 CLDN7 24 110 108 CCDS HistoryNCBI Gene:1366Re-query CCDS DB by CCDS ID:11096.1Re-query CCDS DB by GeneID:1366See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11096.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360325.11 ENSP00000353475.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360325.11Link to Ensembl Protein Viewer:ENSP00000353475.7Re-query CCDS DB by Nucleotide ID:ENST00000360325Re-query CCDS DB by Protein ID:ENSP00000353475
Original member Current member EBI ENST00000397317.8 ENSP00000396638.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397317.8Link to Ensembl Protein Viewer:ENSP00000396638.3Re-query CCDS DB by Nucleotide ID:ENST00000397317Re-query CCDS DB by Protein ID:ENSP00000396638
Original member Current member NCBI NM_001185022.2 NP_001171951.1 Accepted alive Link to Nucleotide Sequence:NM_001185022.2Link to Protein Sequence:NP_001171951.1Re-query CCDS DB by Nucleotide ID:NM_001185022Re-query CCDS DB by Protein ID:NP_001171951Link to BLAST:NP_001171951.1
Original member Current member NCBI NM_001307.6 NP_001298.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001307.6Link to Protein Sequence:NP_001298.3Re-query CCDS DB by Nucleotide ID:NM_001307Re-query CCDS DB by Protein ID:NP_001298Link to BLAST:NP_001298.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171951.1 211 O95471-1 211 100% 0 0
NP_001298.3 211 O95471-1 211 100% 0 0

Chromosomal Locations for CCDS 11096.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7260374 7260536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7260642 7260726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7260821 7260985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7261821 7262043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCCAATTCGGGCCTGCAGTTGCTGGGCTTCTCCATGGCCCTGCTGGGCTGGGTGGGTCTGGTGGCCT
GCACCGCCATCCCGCAGTGGCAGATGAGCTCCTATGCGGGTGACAACATCATCACGGCCCAGGCCATGTA
CAAGGGGCTGTGGATGGACTGCGTCACGCAGAGCACGGGGATGATGAGCTGCAAAATGTACGACTCGGTG
CTCGCCCTGTCCGCGGCCTTGCAGGCCACTCGAGCCCTAATGGTGGTCTCCCTGGTGCTGGGCTTCCTGG
CCATGTTTGTGGCCACGATGGGCATGAAGTGCACGCGCTGTGGGGGAGACGACAAAGTGAAGAAGGCCCG
TATAGCCATGGGTGGAGGCATAATTTTCATCGTGGCAGGTCTTGCCGCCTTGGTAGCTTGCTCCTGGTAT
GGCCATCAGATTGTCACAGACTTTTATAACCCTTTGATCCCTACCAACATTAAGTATGAGTTTGGCCCTG
CCATCTTTATTGGCTGGGCAGGGTCTGCCCTAGTCATCCTGGGAGGTGCACTGCTCTCCTGTTCCTGTCC
TGGGAATGAGAGCAAGGCTGGGTACCGTGTACCCCGCTCTTACCCTAAGTCCAACTCTTCCAAGGAGTAT
GTGTGA

Translation (211 aa):
MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKMYDSV
LALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVACSWY
GHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGALLSCSCPGNESKAGYRVPRSYPKSNSSKEY
V


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH