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Report for CCDS11788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11788.1 Public Homo sapiens 17 ARHGDIA 24 110 108 CCDS HistoryNCBI Gene:396Re-query CCDS DB by CCDS ID:11788.1Re-query CCDS DB by GeneID:396See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11788.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269321.12 ENSP00000269321.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269321.12Link to Ensembl Protein Viewer:ENSP00000269321.7Re-query CCDS DB by Nucleotide ID:ENST00000269321Re-query CCDS DB by Protein ID:ENSP00000269321
Original member Current member EBI ENST00000541078.6 ENSP00000441348.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541078.6Link to Ensembl Protein Viewer:ENSP00000441348.2Re-query CCDS DB by Nucleotide ID:ENST00000541078Re-query CCDS DB by Protein ID:ENSP00000441348
Original member Current member EBI ENST00000580685.5 ENSP00000464205.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580685.5Link to Ensembl Protein Viewer:ENSP00000464205.1Re-query CCDS DB by Nucleotide ID:ENST00000580685Re-query CCDS DB by Protein ID:ENSP00000464205
Original member Current member NCBI NM_001185077.3 NP_001172006.1 Accepted alive Link to Nucleotide Sequence:NM_001185077.3Link to Protein Sequence:NP_001172006.1Re-query CCDS DB by Nucleotide ID:NM_001185077Re-query CCDS DB by Protein ID:NP_001172006Link to BLAST:NP_001172006.1
Original member Current member NCBI NM_004309.6 NP_004300.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004309.6Link to Protein Sequence:NP_004300.1Re-query CCDS DB by Nucleotide ID:NM_004309Re-query CCDS DB by Protein ID:NP_004300Link to BLAST:NP_004300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001172006.1 204 P52565-1 204 100% 0 0
NP_004300.1 204 P52565-1 204 100% 0 0

Chromosomal Locations for CCDS 11788.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81868876 81869075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81869173 81869236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81869330 81869406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81869542 81869625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81869741 81869930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGCTGAGCAGGAGCCCACAGCCGAGCAGCTGGCCCAGATTGCAGCGGAGAACGAGGAGGATGAGCACT
CGGTCAACTACAAGCCCCCGGCCCAGAAGAGCATCCAGGAGATCCAGGAGCTGGACAAGGACGACGAGAG
CCTGCGAAAGTACAAGGAGGCCCTGCTGGGCCGCGTGGCCGTTTCCGCAGACCCCAACGTCCCCAACGTC
GTGGTGACTGGCCTGACCCTGGTGTGCAGCTCGGCCCCGGGCCCCCTGGAGCTGGACCTGACGGGCGACC
TGGAGAGCTTCAAGAAGCAGTCGTTTGTGCTGAAGGAGGGTGTGGAGTACCGGATAAAAATCTCTTTCCG
GGTTAACCGAGAGATAGTGTCCGGCATGAAGTACATCCAGCATACGTACAGGAAAGGCGTCAAGATTGAC
AAGACTGACTACATGGTAGGCAGCTATGGGCCCCGGGCCGAGGAGTACGAGTTCCTGACCCCCGTGGAGG
AGGCACCCAAGGGTATGCTGGCCCGGGGCAGCTACAGCATCAAGTCCCGCTTCACAGACGACGACAAGAC
CGACCACCTGTCCTGGGAGTGGAATCTCACCATCAAGAAGGACTGGAAGGACTGA

Translation (204 aa):
MAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNV
VVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKID
KTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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