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Report for CCDS1749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1749.1 Public Homo sapiens 2 GTF3C2 24 110 108 CCDS HistoryNCBI Gene:2976Re-query CCDS DB by CCDS ID:1749.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 1749.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264720.8 ENSP00000264720.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264720.8Link to Ensembl Protein Viewer:ENSP00000264720.3Re-query CCDS DB by Nucleotide ID:ENST00000264720Re-query CCDS DB by Protein ID:ENSP00000264720
Original member Current member EBI ENST00000359541.6 ENSP00000352536.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359541.6Link to Ensembl Protein Viewer:ENSP00000352536.2Re-query CCDS DB by Nucleotide ID:ENST00000359541Re-query CCDS DB by Protein ID:ENSP00000352536
Original member Current member NCBI NM_001035521.3 NP_001030598.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001035521.3Link to Protein Sequence:NP_001030598.1Re-query CCDS DB by Nucleotide ID:NM_001035521Re-query CCDS DB by Protein ID:NP_001030598Link to BLAST:NP_001030598.1
Original member Current member NCBI NM_001318909.4 NP_001305838.2 Accepted alive Link to Nucleotide Sequence:NM_001318909.4Link to Protein Sequence:NP_001305838.2Re-query CCDS DB by Nucleotide ID:NM_001318909Re-query CCDS DB by Protein ID:NP_001305838Link to BLAST:NP_001305838.2
Original member Current member NCBI NM_001388380.3 NP_001375309.2 Accepted alive Link to Nucleotide Sequence:NM_001388380.3Link to Protein Sequence:NP_001375309.2Re-query CCDS DB by Nucleotide ID:NM_001388380Re-query CCDS DB by Protein ID:NP_001375309Link to BLAST:NP_001375309.2
Original member Current member NCBI NM_001394503.1 NP_001381432.1 Accepted alive Link to Nucleotide Sequence:NM_001394503.1Link to Protein Sequence:NP_001381432.1Re-query CCDS DB by Nucleotide ID:NM_001394503Re-query CCDS DB by Protein ID:NP_001381432Link to BLAST:NP_001381432.1
Original member Current member NCBI NM_001394504.1 NP_001381433.1 Accepted alive Link to Nucleotide Sequence:NM_001394504.1Link to Protein Sequence:NP_001381433.1Re-query CCDS DB by Nucleotide ID:NM_001394504Re-query CCDS DB by Protein ID:NP_001381433Link to BLAST:NP_001381433.1
Original member Current member NCBI NM_001394505.1 NP_001381434.1 Accepted alive Link to Nucleotide Sequence:NM_001394505.1Link to Protein Sequence:NP_001381434.1Re-query CCDS DB by Nucleotide ID:NM_001394505Re-query CCDS DB by Protein ID:NP_001381434Link to BLAST:NP_001381434.1
Original member Current member NCBI NM_001394506.1 NP_001381435.1 Accepted alive Link to Nucleotide Sequence:NM_001394506.1Link to Protein Sequence:NP_001381435.1Re-query CCDS DB by Nucleotide ID:NM_001394506Re-query CCDS DB by Protein ID:NP_001381435Link to BLAST:NP_001381435.1
Original member Current member NCBI NM_001394507.1 NP_001381436.1 Accepted alive Link to Nucleotide Sequence:NM_001394507.1Link to Protein Sequence:NP_001381436.1Re-query CCDS DB by Nucleotide ID:NM_001394507Re-query CCDS DB by Protein ID:NP_001381436Link to BLAST:NP_001381436.1
Original member Current member NCBI NM_001394508.1 NP_001381437.1 Accepted alive Link to Nucleotide Sequence:NM_001394508.1Link to Protein Sequence:NP_001381437.1Re-query CCDS DB by Nucleotide ID:NM_001394508Re-query CCDS DB by Protein ID:NP_001381437Link to BLAST:NP_001381437.1
Original member Current member NCBI NM_001394509.1 NP_001381438.1 Accepted alive Link to Nucleotide Sequence:NM_001394509.1Link to Protein Sequence:NP_001381438.1Re-query CCDS DB by Nucleotide ID:NM_001394509Re-query CCDS DB by Protein ID:NP_001381438Link to BLAST:NP_001381438.1
Original member Current member NCBI NM_001394510.1 NP_001381439.1 Accepted alive Link to Nucleotide Sequence:NM_001394510.1Link to Protein Sequence:NP_001381439.1Re-query CCDS DB by Nucleotide ID:NM_001394510Re-query CCDS DB by Protein ID:NP_001381439Link to BLAST:NP_001381439.1
Original member Current member NCBI NM_001394511.1 NP_001381440.1 Accepted alive Link to Nucleotide Sequence:NM_001394511.1Link to Protein Sequence:NP_001381440.1Re-query CCDS DB by Nucleotide ID:NM_001394511Re-query CCDS DB by Protein ID:NP_001381440Link to BLAST:NP_001381440.1
Original member Current member NCBI NM_001521.4 NP_001512.1 Accepted alive Link to Nucleotide Sequence:NM_001521.4Link to Protein Sequence:NP_001512.1Re-query CCDS DB by Nucleotide ID:NM_001521Re-query CCDS DB by Protein ID:NP_001512Link to BLAST:NP_001512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030598.1 911 Q8WUA4-1 911 100% 0 0
NP_001305838.2 911 Q8WUA4-1 911 100% 0 0
NP_001375309.2 911 Q8WUA4-1 911 100% 0 0
NP_001381432.1 911 Q8WUA4-1 911 100% 0 0
NP_001381433.1 911 Q8WUA4-1 911 100% 0 0
NP_001381434.1 911 Q8WUA4-1 911 100% 0 0
NP_001381435.1 911 Q8WUA4-1 911 100% 0 0
NP_001381436.1 911 Q8WUA4-1 911 100% 0 0
NP_001381437.1 911 Q8WUA4-1 911 100% 0 0
NP_001381438.1 911 Q8WUA4-1 911 100% 0 0
NP_001381439.1 911 Q8WUA4-1 911 100% 0 0
NP_001381440.1 911 Q8WUA4-1 911 100% 0 0
NP_001512.1 911 Q8WUA4-1 911 100% 0 0

Chromosomal Locations for CCDS 1749.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27326675 27326893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27327177 27327284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27328037 27328189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27328468 27328596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27328844 27328931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27329121 27329282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27329379 27329523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27333655 27333784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27333974 27333999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27335598 27335706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27335917 27336028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27336198 27336425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27337244 27337342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27337481 27337558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27337926 27338020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27341948 27342233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27342826 27343147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27343308 27343554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2736 nt):
ATGGATACCTGCGGGGTCGGCTATGTTGCCCTGGGGGAGGCCGGCCCCGTGGGGAACATGACTGTGGTAG
ACTCTCCTGGACAAGAGGTGCTAAATCAGCTTGATGTCAAGACCTCTTCAGAAATGACCAGTGCAGAGGC
TTCCGTAGAGATGTCATTACCTACCCCTTTGCCTGGATTTGAGGATTCTCCTGATCAGAGGAGGCTCCCT
CCAGAGCAGGAAAGCCTCTCCAGACTGGAACAGCCAGATCTTTCTTCAGAGATGTCAAAGGTCTCAAAGC
CTAGGGCCTCAAAGCCTGGCCGGAAGAGAGGTGGTAGGACACGAAAAGGCCCCAAAAGGCCCCAACAGCC
TAATCCTCCATCAGCCCCACTGGTTCCTGGTCTCTTAGATCAATCCAACCCTCTGTCCACCCCCATGCCT
AAGAAACGAGGTCGAAAGTCCAAGGCAGAGCTGCTGCTGCTGAAGTTGTCAAAAGACCTAGATCGGCCAG
AATCTCAATCTCCAAAGAGGCCCCCTGAGGACTTTGAGACCCCTTCTGGGGAACGACCCCGCCGAAGGGC
TGCCCAAGTGGCACTTCTGTATCTTCAGGAACTGGCTGAAGAGCTCTCAACAGCCCTGCCTGCCCCTGTG
TCCTGTCCTGAGGGCCCCAAGGTGAGCAGCCCCACCAAACCGAAGAAGATCCGGCAGCCAGCAGCCTGTC
CAGGTGGAGAAGAGGTGGATGGTGCTCCACGGGATGAAGACTTTTTTCTCCAGGTTGAGGCTGAAGATGT
GGAAGAAAGTGAGGGCCCAAGTGAGAGCTCATCTGAACCTGAGCCTGTAGTGCCCCGAAGCACCCCACGA
GGATCTACTTCAGGGAAACAGAAACCACACTGCCGAGGAATGGCTCCCAATGGCTTACCAAATCATATCA
TGGCTCCTGTTTGGAAGTGCCTCCATCTCACCAAGGACTTCCGAGAGCAGAAACATTCATACTGGGAGTT
TGCTGAGTGGATTCCTTTAGCCTGGAAGTGGCACTTGTTATCTGAGCTTGAGGCCGCTCCCTACCTGCCC
CAGGAGGAGAAGTCTCCATTGTTTTCTGTACAACGTGAAGGGCTACCTGAAGATGGCACCCTCTACCGAA
TAAACAGATTTAGCTCGATCACAGCACATCCAGAGCGCTGGGATGTGTCCTTCTTCACGGGGGGACCGCT
CTGGGCTCTGGACTGGTGCCCAGTGCCAGAGGGGGCAGGAGCCTCGCAATATGTGGCTCTTTTCTCCAGC
CCTGACATGAATGAGACACACCCACTGAGCCAGCTTCATTCGGGTCCTGGGCTGCTCCAGCTCTGGGGCC
TTGGGACCTTGCAGCAAGAAAGCTGTCCTGGCAACAGGGCCCACTTTGTCTATGGGATTGCTTGTGACAA
CGGCTGCATCTGGGACCTCAAGTTCTGCCCCAGTGGAGCATGGGAACTTCCAGGCACCCCTCGGAAGGCT
CCTCTCCTGCCCCGGTTGGGTCTCTTGGCTCTGGCCTGCTCAGACGGGAAAGTACTGCTATTCAGTCTAC
CCCATCCGGAGGCCCTGCTGGCTCAGCAACCCCCAGATGCAGTGAAGCCTGCCATATATAAGGTACAATG
TGTGGCAACTCTGCAGGTGGGGTCTATGCAAGCTACAGACCCCTCTGAGTGTGGTCAGTGCCTTAGCCTG
GCCTGGATGCCTACCAGGCCCCACCAACACCTAGCTGCTGGATATTATAATGGCATGGTGGTTTTCTGGA
ACCTTCCCACTAACTCACCCCTGCAGCGGATACGGCTCTCTGATGGCTCCTTAAAGCTCTACCCCTTCCA
GTGTTTCCTAGCCCATGACCAGGCTGTGCGTACCCTTCAATGGTGCAAAGCTAACAGCCATTTCCTTGTC
TCTGCGGGGAGTGACCGGAAAATCAAATTCTGGGACCTTCGACGTCCTTACGAACCCATAAACTCTATCA
AGCGCTTCTTGAGTACAGAACTGGCCTGGCTGCTTCCCTACAATGGTGTCACTGTGGCTCAGGACAACTG
CTATGCCTCTTATGGACTCTGTGGGATTCATTATATTGACGCTGGTTACCTTGGTTTCAAGGCCTACTTC
ACTGCTCCTCGAAAAGGCACCGTTTGGAGTCTTTCAGGATCCGACTGGCTTGGGACAATAGCTGCAGGAG
ATATATCCGGGGAGCTCATTGCTGCTATATTACCAGATATGGCACTGAATCCAATAAATGTCAAGCGACC
TGTAGAGCGAAGATTTCCTATATATAAAGCAGATCTGATACCGTATCAGGACAGTCCTGAAGGTCCAGAC
CATTCTTCTGCTTCATCTGGGGTCCCCAACCCTCCTAAGGCTCGAACTTACACTGAAACTGTCAACCATC
ACTACTTGCTCTTTCAAGACACAGATTTGGGTTCATTCCATGATCTGCTCCGTAGAGAACCAATGCTGCG
CATGCAGGAGGGAGAGGGGCATTCTCAACTCTGCCTGGACAGGCTGCAGCTGGAGGCTATTCATAAGGTA
CGTTTCAGCCCAAACCTGGACTCCTATGGATGGCTGGTATCTGGGGGGCAGTCAGGGCTGGTTCGAATCC
ATTTTGTCCGTGGACTCGCCTCCCCACTGGGCCACCGTATGCAGCTTGAAAGCCGAGCCCACTTCAATGC
TATGTTCCAACCATCCTCCCCCACTAGACGGCCTGGCTTCTCTCCAACCAGCCATCGCCTTCTGCCCACT
CCCTAG

Translation (911 aa):
MDTCGVGYVALGEAGPVGNMTVVDSPGQEVLNQLDVKTSSEMTSAEASVEMSLPTPLPGFEDSPDQRRLP
PEQESLSRLEQPDLSSEMSKVSKPRASKPGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMP
KKRGRKSKAELLLLKLSKDLDRPESQSPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPV
SCPEGPKVSSPTKPKKIRQPAACPGGEEVDGAPRDEDFFLQVEAEDVEESEGPSESSSEPEPVVPRSTPR
GSTSGKQKPHCRGMAPNGLPNHIMAPVWKCLHLTKDFREQKHSYWEFAEWIPLAWKWHLLSELEAAPYLP
QEEKSPLFSVQREGLPEDGTLYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGAGASQYVALFSS
PDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDNGCIWDLKFCPSGAWELPGTPRKA
PLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAVKPAIYKVQCVATLQVGSMQATDPSECGQCLSL
AWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANSHFLV
SAGSDRKIKFWDLRRPYEPINSIKRFLSTELAWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYF
TAPRKGTVWSLSGSDWLGTIAAGDISGELIAAILPDMALNPINVKRPVERRFPIYKADLIPYQDSPEGPD
HSSASSGVPNPPKARTYTETVNHHYLLFQDTDLGSFHDLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKV
RFSPNLDSYGWLVSGGQSGLVRIHFVRGLASPLGHRMQLESRAHFNAMFQPSSPTRRPGFSPTSHRLLPT
P


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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