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Report for CCDS53314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53314.1 Public Homo sapiens 1 CCDC17 24 110 108 CCDS HistoryNCBI Gene:149483Re-query CCDS DB by CCDS ID:53314.1Re-query CCDS DB by GeneID:149483See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53314.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421127.6 ENSP00000389415.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421127.6Link to Ensembl Protein Viewer:ENSP00000389415.2Re-query CCDS DB by Nucleotide ID:ENST00000421127Re-query CCDS DB by Protein ID:ENSP00000389415
Original member Current member NCBI NM_001190182.2 NP_001177111.1 Accepted alive Link to Nucleotide Sequence:NM_001190182.2Link to Protein Sequence:NP_001177111.1Re-query CCDS DB by Nucleotide ID:NM_001190182Re-query CCDS DB by Protein ID:NP_001177111Link to BLAST:NP_001177111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177111.1 613 Q96LX7-5 613 100% 0 0

Chromosomal Locations for CCDS 53314.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 45620275 45620433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45620723 45620833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45620903 45621113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45621281 45621484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45621638 45621735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45621877 45621995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45622241 45622348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45622549 45622667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45622751 45622834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45622955 45623117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45623217 45623412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45623557 45623652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45623736 45623909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGGACTCCCACTCTGGGGAGCCTGCGCTCCTGCCCTGTGGGACCTGTGACATGGTTTTCCGCTCCTCAG
CTCTGTTAGCCACCCATACTCAGCGCTTCTGCATTGGCCACCCGACCCAAGAGATGACATTTGGAGCACA
GGCATCAGTTGCCACTGAACCCCAGCGGGCCGCGGTTGTGCCACAAGAACACCAGGGCGTGCCACAAGAA
CCCCAGGGCCTCCCAGACCAGCAGGCCAGTAGATCTGCTCTAAAGAGGTTAACAGAGGAGGAAATGCGGC
CCTGGATAACAGAGGTCCCCAGGGTGTTCGCGGGGCCCTGGACACGTTCCGAGGCGCGGCCTCAGAGTCC
CATGTCCGAGGCGGTGGGAAGCCCCAGCGAGCGGCTGCGGGCGCTGTTCAGGACTCGCGCGAGGCGCGTG
GCGGAGATGGAAGCGCAGAGCCGGGCCCTGCAGCTACGCGGCGAGGAACTGAGCCGACGCCTCCAAGTTG
TGGCCTGTACGCGGGGCGGGATGTCCCGCCTCTTCGGCCTGGAGCAGGAGATTCGAGAACTACAAGCTGA
GGCCGGGAGGACGCGGGGAGCTCTAGAGGTGTTGGGGGCCCGCATTCAGGAGCTGCAGGCGGAGCCAGGG
AACCCGCTGAGCTCCCGGCGAGAGGCAGAACTTTATTCTCCAGTGCAAAAGGCCAACCCGGGAACTCTGG
CTGCCGAAATCCGGGCGCTGCGGGAGGCCTACATTCGAGACGGGGGCCGGGACCCCGGCGTGCTGGGCCA
GATATGGCAGTTGCAGGTGGAGGCGTCTGCACTGGAGCTGCAGCGGTCGCAGACCCGCAGAGGAAGGGCA
GGTGCCACCTCAGGGGAGCTTCCAGTAGTGGAGGCTGAAAACCGGCGCTTGGAGGCAGAAATCTTGGCCT
TGCAAATGCAGAGGGGTCGGGCACCCTTGGGGCCCCAGGATCTGCGACTCCTGGGGGATGCCAGCCTACA
ACCGAAGGGGAGGAGAGATCCCCCACTCCTCCCGCCACCGGTGGCACCACCGCTGCCACCACTTCCAGGC
TTCTCGGAGCCACAGCTTCCTGGAACAATGACCAGAAACCTGGGCCTGGACTCACACTTCCTCCTGCCCA
CATCGGACATGCTGGGCCCTGCACCCTATGATCCTGGGGCTGGCCTGGTCATTTTCTATGATTTCCTGCG
GGGCCTTGAGGCTTCCTGGATTTGGGTGCAACTAAGGACTGGCTTGGCACGCGATGGACGGGATACAGGA
AGGACCACAGCGTTGCCCCCAGCCCTTTGCCTGCCCCCACCTCCTGCTCCCGGGCCCATGGGCAACTGTG
CCATCCTTGCCAGCAGGCAGCCTGTGCCCAGACTACCACCCTCATCATCAGTATCTTTGGTCTGTGAGCT
GCAGGTCTGGCAGGGGCTAGCATGGGCTAGGGCACCACAGCCAAAGGCTTGGGTCTCACTTGGACTATTT
GACCAAGATCAGCGGGTGCTAAGTGGCCGCTGGCGCCTCCCACTTCGGGCCCTTCCTCTGGACCCCAGCC
TTAGCCTTGGGCAGCTGAATGGGATTCCTCAGGCAGGTCAGGCTGAGCTCTTTCTGCGGCTGGTGAATGC
AAGAGATGCAGCTGTACAGACACTGGCAGAGATCAATCCAGCAAGTGTCCATGAGTACCAGTACCCACCT
CCGGTGTCCAGCACATCTTCACTGGAAGCCAGCTTCCTCACCCCCGCAGTTGGCTTTGCTGATCCCCCAC
CTCGTACAGAAGAGCCCCTCAGTGGAGTCAAGGATAGAGATGAGGGTTTGGGCCCTCACCACAGTTCTGA
CTTGCCCCCAGTGAGTTTCTGA

Translation (613 aa):
MDSHSGEPALLPCGTCDMVFRSSALLATHTQRFCIGHPTQEMTFGAQASVATEPQRAAVVPQEHQGVPQE
PQGLPDQQASRSALKRLTEEEMRPWITEVPRVFAGPWTRSEARPQSPMSEAVGSPSERLRALFRTRARRV
AEMEAQSRALQLRGEELSRRLQVVACTRGGMSRLFGLEQEIRELQAEAGRTRGALEVLGARIQELQAEPG
NPLSSRREAELYSPVQKANPGTLAAEIRALREAYIRDGGRDPGVLGQIWQLQVEASALELQRSQTRRGRA
GATSGELPVVEAENRRLEAEILALQMQRGRAPLGPQDLRLLGDASLQPKGRRDPPLLPPPVAPPLPPLPG
FSEPQLPGTMTRNLGLDSHFLLPTSDMLGPAPYDPGAGLVIFYDFLRGLEASWIWVQLRTGLARDGRDTG
RTTALPPALCLPPPPAPGPMGNCAILASRQPVPRLPPSSSVSLVCELQVWQGLAWARAPQPKAWVSLGLF
DQDQRVLSGRWRLPLRALPLDPSLSLGQLNGIPQAGQAELFLRLVNARDAAVQTLAEINPASVHEYQYPP
PVSSTSSLEASFLTPAVGFADPPPRTEEPLSGVKDRDEGLGPHHSSDLPPVSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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