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Report for CCDS3232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3232.1 Public Homo sapiens 3 MRPL47 24 110 108 CCDS HistoryNCBI Gene:57129Re-query CCDS DB by CCDS ID:3232.1Re-query CCDS DB by GeneID:57129See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3232.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000476781.6 ENSP00000417602.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000476781.6Link to Ensembl Protein Viewer:ENSP00000417602.1Re-query CCDS DB by Nucleotide ID:ENST00000476781Re-query CCDS DB by Protein ID:ENSP00000417602
Original member Current member NCBI NM_020409.3 NP_065142.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020409.3Link to Protein Sequence:NP_065142.2Re-query CCDS DB by Nucleotide ID:NM_020409Re-query CCDS DB by Protein ID:NP_065142Link to BLAST:NP_065142.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065142.2 250 Q9HD33-1 250 100% 0 0

Chromosomal Locations for CCDS 3232.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 179588872 179588995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179592644 179592739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179593765 179593895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179598675 179598771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179601730 179601790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179602652 179602797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179604527 179604624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCTGCGGCCGGTTTGGCCCTTCTTTGTAGGAGAGTTTCATCCGCCCTGAAATCTTCCCGATCGTTAA
TAACTCCTCAGGTCCCTGCCTGCACAGGGTTTTTTCTTAGTTTGTTGCCTAAGAGTACACCAAATGTGAC
ATCCTTTCACCAATATAGATTACTTCATACCACATTGTCAAGGAAAGGACTAGAAGAATTTTTTGATGAC
CCAAAAAACTGGGGGCAAGAAAAAGTAAAATCTGGAGCAGCATGGACCTGTCAGCAACTAAGGAACAAAA
GTAATGAAGATTTACACAAACTTTGGTATGTCTTACTGAAAGAAAGAAACATGCTTCTAACCCTAGAGCA
GGAGGCCAAGCGGCAGAGATTGCCAATGCCAAGTCCAGAGCGGTTAGATAAGGTAGTAGATTCCATGGAT
GCATTAGATAAAGTTGTCCAGGAAAGAGAAGATGCCCTAAGGCTTCTTCAGACTGGTCAAGAAAGAGCTA
GACCTGGTGCTTGGAGAAGAGACATCTTTGGAAGAATCATCTGGCACAAGTTCAAGCAGTGGGTTATACC
TTGGCACCTAAATAAAAGATACAATAGGAAACGATTCTTTGCCTTGCCTTATGTGGACCATTTTCTCAGA
CTGGAACGTGAGAAACGAGCCCGCATCAAAGCACGGAAGGAAAATTTAGAGAGAAAGAAAGCAAAAATTC
TTTTAAAAAAGTTTCCACATCTTGCTGAAGCCCAAAAGTCAAGTCTTGTCTAA

Translation (250 aa):
MAAAGLALLCRRVSSALKSSRSLITPQVPACTGFFLSLLPKSTPNVTSFHQYRLLHTTLSRKGLEEFFDD
PKNWGQEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLDKVVDSMD
ALDKVVQEREDALRLLQTGQERARPGAWRRDIFGRIIWHKFKQWVIPWHLNKRYNRKRFFALPYVDHFLR
LEREKRARIKARKENLERKKAKILLKKFPHLAEAQKSSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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