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Report for CCDS5331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5331.1 Public Homo sapiens 7 SNX8 24 110 108 CCDS HistoryNCBI Gene:29886Re-query CCDS DB by CCDS ID:5331.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5331.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222990.8 ENSP00000222990.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222990.8Link to Ensembl Protein Viewer:ENSP00000222990.3Re-query CCDS DB by Nucleotide ID:ENST00000222990Re-query CCDS DB by Protein ID:ENSP00000222990
Original member Current member NCBI NM_013321.4 NP_037453.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013321.4Link to Protein Sequence:NP_037453.1Re-query CCDS DB by Nucleotide ID:NM_013321Re-query CCDS DB by Protein ID:NP_037453Link to BLAST:NP_037453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037453.1 465 Q9Y5X2 465 100% 0 0

Chromosomal Locations for CCDS 5331.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 2255056 2255169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2256874 2257023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2257365 2257514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2257735 2257803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2263230 2263362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2264298 2264458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2269559 2269639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2271850 2271971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2275112 2275229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2278100 2278305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 2314328 2314421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGACTGGCCGCGCGATGGACCCGCTGCCCGCGGCTGCAGTCGGGGCGGCAGCTGAGGCGGAGGCTGACG
AGGAGGCGGATCCCCCGGCGTCAGATCTGCCGACACCCCAGGCCATCGAGCCCCAGGCCATCGTGCAGCA
GGTCCCAGCCCCCAGTCGAATGCAGATGCCGCAGGGGAACCCGCTGCTGCTGTCCCACACCCTGCAGGAG
CTGCTGGCCAGGGACACCGTGCAGGTGGAGCTCATTCCGGAGAAGAAGGGCCTCTTCCTGAAGCATGTGG
AGTATGAGGTTTCCAGCCAGCGCTTCAAGTCCTCGGTATACAGACGGTACAATGACTTCGTGGTCTTCCA
GGAGATGCTCCTGCACAAGTTCCCCTACCGTATGGTGCCTGCCCTGCCACCCAAGAGAATGCTGGGAGCT
GACAGGGAGTTCATCGAGGCCAGGAGGAGAGCCCTGAAGCGCTTCGTCAACCTGGTGGCGCGACACCCCC
TGTTCTCCGAGGATGTGGTCCTCAAGCTCTTCCTGTCCTTCAGCGGCTCGGATGTGCAGAACAAGTTAAA
GGAGTCAGCACAGTGCGTCGGGGACGAATTCCTGAACTGTAAGCTGGCTACCAGGGCCAAGGACTTCCTC
CCAGCTGACATCCAGGCTCAGTTTGCCATCAGCCGGGAGCTGATCCGGAACATCTACAATAGCTTTCACA
AGCTTCGCGACAGGGCCGAGCGGATCGCATCGCGGGCCATCGACAATGCGGCAGATCTTCTCATATTCGG
GAAGGAGCTAAGTGCAATAGGGTCTGACACGACCCCGCTGCCCTCCTGGGCCGCTCTGAATAGCAGCACG
TGGGGGTCCCTGAAGCAGGCTCTGAAAGGCCTGTCTGTGGAATTCGCGCTGCTCGCCGACAAGGCTGCAC
AACAGGGTAAGCAGGAAGAGAACGACGTGGTGGAGAAGCTGAACCTCTTCTTGGATCTGCTGCAGTCCTA
TAAGGACCTGTGCGAGCGGCATGAGAAGGGCGTGTTGCACAAGCACCAGCGGGCCCTGCACAAGTACAGC
CTGATGAAGAGGCAGATGATGAGCGCCACCGCGCAGAACCGCGAGCCGGAGTCCGTGGAGCAGCTGGAGT
CCCGCATTGTGGAGCAGGAGAACGCGATTCAGACGATGGAGCTGCGGAACTACTTCTCCCTGTACTGCCT
GCACCAGGAGACGCAGCTCATCCACGTCTACCTGCCCCTCACCTCCCACATCCTCCGCGCCTTCGTCAAC
TCTCAGATCCAAGGGCACAAGGAGATGAGCAAGGTGTGGAACGACCTGAGGCCCAAGCTCAGCTGCCTCT
TTGCGGGACCACACAGCACCCTGACCCCACCGTGCTCCCCGCCGGAGGACGGCCTGTGTCCTCACTAG

Translation (465 aa):
MTGRAMDPLPAAAVGAAAEAEADEEADPPASDLPTPQAIEPQAIVQQVPAPSRMQMPQGNPLLLSHTLQE
LLARDTVQVELIPEKKGLFLKHVEYEVSSQRFKSSVYRRYNDFVVFQEMLLHKFPYRMVPALPPKRMLGA
DREFIEARRRALKRFVNLVARHPLFSEDVVLKLFLSFSGSDVQNKLKESAQCVGDEFLNCKLATRAKDFL
PADIQAQFAISRELIRNIYNSFHKLRDRAERIASRAIDNAADLLIFGKELSAIGSDTTPLPSWAALNSST
WGSLKQALKGLSVEFALLADKAAQQGKQEENDVVEKLNLFLDLLQSYKDLCERHEKGVLHKHQRALHKYS
LMKRQMMSATAQNREPESVEQLESRIVEQENAIQTMELRNYFSLYCLHQETQLIHVYLPLTSHILRAFVN
SQIQGHKEMSKVWNDLRPKLSCLFAGPHSTLTPPCSPPEDGLCPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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