NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54230.1 Public Homo sapiens 19 TMEM221 24 110 108 CCDS HistoryNCBI Gene:100130519Re-query CCDS DB by CCDS ID:54230.1Re-query CCDS DB by GeneID:100130519See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54230.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341130.6 ENSP00000342162.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341130.6Link to Ensembl Protein Viewer:ENSP00000342162.5Re-query CCDS DB by Nucleotide ID:ENST00000341130Re-query CCDS DB by Protein ID:ENSP00000342162
Original member Current member NCBI NM_001190844.2 NP_001177773.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001190844.2Link to Protein Sequence:NP_001177773.1Re-query CCDS DB by Nucleotide ID:NM_001190844Re-query CCDS DB by Protein ID:NP_001177773Link to BLAST:NP_001177773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177773.1 291 A6NGB7 291 100% 0 0

Chromosomal Locations for CCDS 54230.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17436458 17436927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17445199 17445284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17448143 17448462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGCCCGTTCTTACGGCGGCCGGGTGCTGGCTGCAATGACCCTGCTGGGCATCGCGGCGGCCGTGCTGG
CG
GCGCTGGGCGCGCAGCTGCTGTTTCAGCTGCAGGCGGGCCGCGCCGAGCTGCGGGGGCTGCGCGCCGA
G
GGGCTGGGCCAGGAGCTGGGCGCCGGCCCCGGGCTGCCAGAGGACGCGGCCGGGACGCTGCTGCCGCTG
GCC
GCCGCGCTGGCCGCGCTGGTGCTCGTGCTGGGGTTCACCTGCTTGCTGCTCGCCGCGCTCTGTGGCC
AC
CTGGGCGCCGAGCTGGCGCGGGGGCCTGGCCCCAGGAGGTCTGACTGGTTTCTCTACGACTGCCGCCT
C
CTCAGACATGTGGCCCTTGGCCTTTTCTGCTGTGGGATCTCCGTCTATTTAGCAGCACTGTCCATCTAT
GCC
TTGCTACTTTTCGAGATCGAGACAGGCGCAGCAGCTGCTTCCATCCTCGGCTCGGGCACCCTGGTTC
TG
GTGGCTGTGCTGACCCACACTCTCCTCCGGGCTGCCCGGGCTGCCCGCCGTGGGCTCCATGAGTTGTC
C
CCGCCATCCTTTGAAGACGACCTCGCCCGCCCTGCCGAAGTCTCCAAGGCCAGCCCCAGAGCTCAGCCT
CAG
CAGGGTATCCATCGTCGGACCCCCTATTCAACCTGTCCAGAGCCTGGGGACCCCTTTGGGTCCATGG
CC
ACTGCCACAGCACCTGCAGCCCTGGAGGGAGGCTGGGAGAGCAGCCTGCCTGCATCCAGAATGCACCG
G
ACACTGTCGGCTGGCCTGGGGCACTGGGACGGGGTTACGCACGAGATGCGTCGAATGCTGGGCCACAGA
CCA
GGGAGCATGGGGAAGGACTCCACACTGGTGTGA


Translation (291 aa):
MARSYGGRVLAAMTLLGIAAAVLAALGAQLLFQLQAGRAELRGLRAEGLGQELGAGPGLPEDAAGTLLPL
A
AALAALVLVLGFTCLLLAALCGHLGAELARGPGPR
RSDWFLYDCRLLRHVALGLFCCGISVYLAALSIY
A
LLLFEIETGAAAASILGSGTLVLVAVLTHTLLRAARAARRGLHELSPPSFEDDLARPAEVSKASPRAQP
Q
QGIHRRTPYSTCPEPGDPFGSMATATAPAALEGGWESSLPASRMHRTLSAGLGHWDGVTHEMRRMLGHR
P
GSMGKDSTLV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser