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Report for CCDS13023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13023.1 Public Homo sapiens 20 PDYN 24 110 108 CCDS HistoryNCBI Gene:5173Re-query CCDS DB by CCDS ID:13023.1Re-query CCDS DB by GeneID:5173See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13023.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217305.3 ENSP00000217305.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217305.3Link to Ensembl Protein Viewer:ENSP00000217305.2Re-query CCDS DB by Nucleotide ID:ENST00000217305Re-query CCDS DB by Protein ID:ENSP00000217305
Original member Current member EBI ENST00000539905.5 ENSP00000440185.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539905.5Link to Ensembl Protein Viewer:ENSP00000440185.1Re-query CCDS DB by Nucleotide ID:ENST00000539905Re-query CCDS DB by Protein ID:ENSP00000440185
Original member Current member EBI ENST00000540134.5 ENSP00000442259.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540134.5Link to Ensembl Protein Viewer:ENSP00000442259.1Re-query CCDS DB by Nucleotide ID:ENST00000540134Re-query CCDS DB by Protein ID:ENSP00000442259
Original member Current member NCBI NM_001190892.1 NP_001177821.1 Accepted alive Link to Nucleotide Sequence:NM_001190892.1Link to Protein Sequence:NP_001177821.1Re-query CCDS DB by Nucleotide ID:NM_001190892Re-query CCDS DB by Protein ID:NP_001177821Link to BLAST:NP_001177821.1
Original member Current member NCBI NM_001190898.3 NP_001177827.1 Accepted alive Link to Nucleotide Sequence:NM_001190898.3Link to Protein Sequence:NP_001177827.1Re-query CCDS DB by Nucleotide ID:NM_001190898Re-query CCDS DB by Protein ID:NP_001177827Link to BLAST:NP_001177827.1
Original member Current member NCBI NM_001190899.2 NP_001177828.1 Accepted alive Link to Nucleotide Sequence:NM_001190899.2Link to Protein Sequence:NP_001177828.1Re-query CCDS DB by Nucleotide ID:NM_001190899Re-query CCDS DB by Protein ID:NP_001177828Link to BLAST:NP_001177828.1
Original member Current member NCBI NM_001190900.1 NP_001177829.1 Accepted alive Link to Nucleotide Sequence:NM_001190900.1Link to Protein Sequence:NP_001177829.1Re-query CCDS DB by Nucleotide ID:NM_001190900Re-query CCDS DB by Protein ID:NP_001177829Link to BLAST:NP_001177829.1
Original member Current member NCBI NM_024411.5 NP_077722.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024411.5Link to Protein Sequence:NP_077722.1Re-query CCDS DB by Nucleotide ID:NM_024411Re-query CCDS DB by Protein ID:NP_077722Link to BLAST:NP_077722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177821.1 254 P01213 254 100% 0 0
NP_001177827.1 254 P01213 254 100% 0 0
NP_001177828.1 254 P01213 254 100% 0 0
NP_001177829.1 254 P01213 254 100% 0 0
NP_077722.1 254 P01213 254 100% 0 0

Chromosomal Locations for CCDS 13023.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1980323 1980958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1982956 1983084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGCCTGGCAGGGGCTGGTCCTGGCTGCCTGCCTCCTCATGTTCCCCTCCACCACAGCGGACTGCCTGT
CGCGGTGCTCCTTGTGTGCTGTAAAGACCCAGGATGGTCCCAAACCTATCAATCCCCTGATTTGCTCCCT
GCAATGCCAGGCTGCCCTGCTGCCCTCTGAGGAATGGGAGAGATGCCAGAGCTTTCTGTCTTTTTTCACC
CCCTCCACCCTTGGGCTCAATGACAAGGAGGACTTGGGGAGCAAGTCGGTTGGGGAAGGGCCCTACAGTG
AGCTGGCCAAGCTCTCTGGGTCATTCCTGAAGGAGCTGGAGAAAAGCAAGTTTCTCCCAAGTATCTCAAC
AAAGGAGAACACTCTGAGCAAGAGCCTGGAGGAGAAGCTCAGGGGTCTCTCTGACGGGTTTAGGGAGGGA
GCAGAGTCTGAGCTGATGAGGGATGCCCAGCTGAACGATGGTGCCATGGAGACTGGCACACTCTATCTCG
CTGAGGAGGACCCCAAGGAGCAGGTCAAACGCTATGGGGGCTTTTTGCGCAAATACCCCAAGAGGAGCTC
AGAGGTGGCTGGGGAGGGGGACGGGGATAGCATGGGCCATGAGGACCTGTACAAACGCTATGGGGGCTTC
TTGCGGCGCATTCGTCCCAAGCTCAAGTGGGACAACCAGAAGCGCTATGGCGGTTTTCTCCGGCGCCAGT
TCAAGGTGGTGACTCGGTCTCAGGAAGATCCGAATGCTTACTCTGGAGAGCTTTTTGATGCATAA

Translation (254 aa):
MAWQGLVLAACLLMFPSTTADCLSRCSLCAVKTQDGPKPINPLICSLQCQAALLPSEEWERCQSFLSFFT
PSTLGLNDKEDLGSKSVGEGPYSELAKLSGSFLKELEKSKFLPSISTKENTLSKSLEEKLRGLSDGFREG
AESELMRDAQLNDGAMETGTLYLAEEDPKEQVKRYGGFLRKYPKRSSEVAGEGDGDSMGHEDLYKRYGGF
LRRIRPKLKWDNQKRYGGFLRRQFKVVTRSQEDPNAYSGELFDA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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