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Report for CCDS13508.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13508.2 Public Homo sapiens 20 DIDO1 24 110 108 CCDS HistoryNCBI Gene:11083Re-query CCDS DB by CCDS ID:13508.2Re-query CCDS DB by GeneID:11083See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13508.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395340.5 ENSP00000378749.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395340.5Link to Ensembl Protein Viewer:ENSP00000378749.1Re-query CCDS DB by Nucleotide ID:ENST00000395340Re-query CCDS DB by Protein ID:ENSP00000378749
Original member Current member NCBI NM_001193370.2 NP_001180299.1 Accepted alive Link to Nucleotide Sequence:NM_001193370.2Link to Protein Sequence:NP_001180299.1Re-query CCDS DB by Nucleotide ID:NM_001193370Re-query CCDS DB by Protein ID:NP_001180299Link to BLAST:NP_001180299.1
Original member Current member NCBI NM_080797.4 NP_542987.2 Accepted alive Link to Nucleotide Sequence:NM_080797.4Link to Protein Sequence:NP_542987.2Re-query CCDS DB by Nucleotide ID:NM_080797Re-query CCDS DB by Protein ID:NP_542987Link to BLAST:NP_542987.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180299.1 1189 Q9BTC0-1 1189 100% 0 0
NP_542987.2 1189 Q9BTC0-1 1189 100% 0 0

Chromosomal Locations for CCDS 13508.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 62890931 62891155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62891987 62892076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62892809 62892962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62893666 62894194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62894413 62894548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62894810 62894914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62895049 62895165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62896233 62896392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62896531 62896996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62905887 62906100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62907147 62907359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62909699 62910020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62910774 62911612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3570 nt):
ATGGACGACAAAGGCGACCCGAGCAATGAGGAGGCACCTAAGGCCATCAAACCCACCAGCAAAGAGTTCA
GGAAAACATGGGGTTTTCGAAGGACCACTATCGCCAAGCGAGAGGGCGCAGGGGACGCGGAGGCTGACCC
ACTGGAGCCGCCACCCCCACAGCAGCAGCTGGGCCTGTCCCTGCGGCGCAGTGGGAGGCAGCCCAAGCGC
ACTGAGCGCGTGGAGCAGTTCCTGACCATTGCGCGGCGCCGCGGCAGGAGGAGCATGCCTGTCTCCCTGG
AGGATTCTGGTGAGCCCACGTCCTGCCCCGCCACAGACGCCGAGACAGCCTCCGAGGGCAGCGTGGAAAG
CGCTTCTGAGACCAGAAGCGGCCCCCAGTCTGCTTCCACAGCTGTGAAGGAACGACCAGCCTCTTCTGAA
AAGGTGAAAGGAGGGGATGACCACGATGACACCTCCGATAGTGACAGCGATGGCCTGACCTTGAAAGAGC
TTCAGAATCGCCTTCGCAGGAAGCGGGAACAGGAGCCCACTGAGAGGCCCCTGAAAGGGATCCAGAGTCG
CCTGCGGAAGAAGCGCCGGGAGGAGGGTCCCGCCGAGACTGTGGGCTCCGAGGCCAGTGACACTGTGGAG
GGCGTCCTGCCCAGTAAGCAGGAGCCCGAGAACGATCAGGGGGTTGTGTCCCAGGCTGGGAAAGATGACA
GAGAGAGTAAGTTGGAGGGAAAGGCGGCTCAGGACATCAAAGATGAGGAGCCTGGAGACTTGGGCCGACC
GAAGCCTGAATGTGAGGGTTACGACCCCAACGCCCTGTATTGCATTTGCCGCCAGCCTCACAACAACAGG
TTTATGATTTGCTGTGACCGCTGTGAAGAATGGTTTCATGGCGATTGTGTGGGCATTTCTGAGGCTCGAG
GGAGGCTTTTGGAAAGGAATGGGGAAGACTATATCTGCCCAAACTGCACCATTCTGCAAGTGCAGGATGA
GACTCATTCAGAAACGGCAGATCAGCAGGAAGCTAAATGGAGACCTGGAGATGCTGATGGCACCGATTGT
ACAAGTATAGGAACAATAGAGCAGAAGTCTAGCGAAGACCAAGGGATAAAGGGTAGAATTGAGAAAGCTG
CAAATCCAAGTGGCAAGAAGAAACTCAAGATCTTCCAGCCTGTGATAGAGGCGCCTGGTGCCTCAAAATG
TATTGGCCCCGGGTGCTGTCACGTGGCGCAGCCCGACTCGGTGTACTGCAGTAATGACTGTATCCTCAAA
CACGCCGCAGCGACAATGAAGTTTCTAAGCTCAGGTAAAGAACAGAAGCCAAAGCCTAAAGAAAAGATGA
AGATGAAGCCAGAGAAGCCCAGTCTTCCGAAATGCGGTGCTCAGGCAGGTATTAAAATCTCTTCTGTGCA
CAAGAGACCAGCTCCAGAAAAAAAAGAGACCACAGTGAAGAAGGCAGTGGTGGTCCCTGCGCGGAGTGAA
GCACTCGGGAAGGAAGCAGCTTGTGAGAGCAGCACGCCGTCGTGGGCGAGCGATCACAATTACAATGCAG
TAAAGCCAGAAAAGACTGCTGCTCCCTCGCCGTCACTGTTGTATAAATCCACGAAGGAAGACAGGAGGTC
CGAGGAGAAAGCGGCAGCCATGGCAGCCTCAAAGAAAACAGCCCCTCCAGGCTCCGCGGTGGGCAAGCAG
CCTGCACCTAGAAACCTCGTGCCAAAGAAGTCTTCTTTTGCTAATGTGGCAGCAGCCACACCAGCCATTA
AAAAGCCACCCTCAGGTTTCAAGGGCACCATCCCCAAGAGGCCATGGCTCTCCGCTACCCCATCGAGTGG
TGCTTCAGCTGCCAGGCAGGCCGGACCGGCACCTGCAGCGGCAACGGCTGCCTCCAAGAAGTTCCCTGGC
TCCGCTGCTTTGGTGGGAGCCGTAAGGAAGCCAGTGGTACCTTCTGTTCCAATGGCCTCGCCAGCCCCAG
GACGCCTTGGGGCTATGAGTGCTGCACCATCGCAGCCAAATTCACAAATTCGGCAAAATATCAGACGCTC
CTTAAAAGAGATTTTGTGGAAAAGAGTCAATGACAGCGATGACTTAATCATGACAGAAAACGAAGTAGGA
AAAATTGCCCTCCATATTGAGAAGGAGATGTTTAACTTGTTTCAAGTTACAGATAATCGCTACAAGAGTA
AATATCGCAGCATCATGTTCAACCTGAAGGACCCTAAAAATCAGGGACTCTTCCATCGTGTTCTGCGTGA
GGAAATCTCTTTGGCGAAACTTGTGAGACTGAAGCCAGAAGAACTTGTATCTAAAGAGCTTTCCACGTGG
AAAGAGAGGCCAGCGAGATCTGTGATGGAGTCCAGAACTAAACTGCACAATGAAAGCAAGAAGACGGCCC
CCAGGCAGGAGGCCATCCCCGATCTGGAGGACTCTCCGCCAGTGTCGGATTCAGAGGAACAGCAAGAGTC
AGCACGTGCTGTCCCTGAGAAGAGCACAGCGCCGCTTCTCGACGTCTTCAGCAGCATGTTGAAAGACACC
ACCAGTCAGCACCGCGCACACCTCTTCGATCTCAACTGTAAAATTTGCACAGGCCAGGTTCCCTCCGCAG
AAGATGAGCCAGCTCCGAAAAAACAAAAATTGTCAGCTTCTGTTAAGAAAGAAGACTTAAAATCAAAGCA
TGACAGCTCTGCACCTGACCCAGCTCCGGATTCAGCTGATGAGGTGATGCCGGAGGCTGTGCCTGAAGTT
GCCTCTGAGCCAGGCCTAGAAAGTGCTTCTCATCCAAATGTGGACAGAACGTATTTCCCTGGGCCTCCAG
GAGATGGCCATCCCGAGCCCTCCCCGCTGGAAGACCTGTCCCCCTGCCCAGCCTCCTGTGGGAGCGGGGT
GGTCACCACCGTCACAGTGTCCGGCCGGGACCCCAGGACCGCTCCAAGCAGTTCATGCACAGCCGTGGCC
TCCGCAGCATCCCGCCCAGACAGCACCCACATGGTGGAAGCCAGACAGGATGTGCCGAAGCCTGTCTTGA
CTTCTGTGATGGTGCCCAAGTCCATACTAGCTAAGCCATCCTCATCTCCTGACCCAAGATACCTGTCAGT
TCCTCCGTCACCAAATATCAGCACTTCAGAATCACGTTCCCCTCCAGAGGGAGACACGACCCTCTTTTTG
TCTCGACTCAGCACCATTTGGAAAGGATTTATTAACATGCAGAGTGTGGCAAAATTTGTCACTAAGGCGT
ATCCTGTCTCTGGGTGTTTTGATTACCTCAGTGAGGATTTGCCTGACACAATTCACATTGGTGGGAGGAT
CGCACCGAAGACAGTTTGGGATTATGTTGGCAAACTCAAGTCTTCTGTGTCTAAGGAGCTCTGTCTGATC
CGCTTCCACCCCGCCACAGAGGAAGAGGAGGTCGCCTATATCTCTCTCTACTCCTATTTCAGCAGCCGTG
GCCGCTTTGGTGTTGTAGCTAATAACAACAGGCACGTCAAGGACCTCTACCTGATCCCGCTGAGCGCCCA
GGACCCTGTTCCATCCAAACTCTTGCCCTTTGAGGGACCAGGTAAGCGCCGGCTTTCTGGGTGGAGGTGA

Translation (1189 aa):
MDDKGDPSNEEAPKAIKPTSKEFRKTWGFRRTTIAKREGAGDAEADPLEPPPPQQQLGLSLRRSGRQPKR
TERVEQFLTIARRRGRRSMPVSLEDSGEPTSCPATDAETASEGSVESASETRSGPQSASTAVKERPASSE
KVKGGDDHDDTSDSDSDGLTLKELQNRLRRKREQEPTERPLKGIQSRLRKKRREEGPAETVGSEASDTVE
GVLPSKQEPENDQGVVSQAGKDDRESKLEGKAAQDIKDEEPGDLGRPKPECEGYDPNALYCICRQPHNNR
FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILQVQDETHSETADQQEAKWRPGDADGTDC
TSIGTIEQKSSEDQGIKGRIEKAANPSGKKKLKIFQPVIEAPGASKCIGPGCCHVAQPDSVYCSNDCILK
HAAATMKFLSSGKEQKPKPKEKMKMKPEKPSLPKCGAQAGIKISSVHKRPAPEKKETTVKKAVVVPARSE
ALGKEAACESSTPSWASDHNYNAVKPEKTAAPSPSLLYKSTKEDRRSEEKAAAMAASKKTAPPGSAVGKQ
PAPRNLVPKKSSFANVAAATPAIKKPPSGFKGTIPKRPWLSATPSSGASAARQAGPAPAAATAASKKFPG
SAALVGAVRKPVVPSVPMASPAPGRLGAMSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVG
KIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTW
KERPARSVMESRTKLHNESKKTAPRQEAIPDLEDSPPVSDSEEQQESARAVPEKSTAPLLDVFSSMLKDT
TSQHRAHLFDLNCKICTGQVPSAEDEPAPKKQKLSASVKKEDLKSKHDSSAPDPAPDSADEVMPEAVPEV
ASEPGLESASHPNVDRTYFPGPPGDGHPEPSPLEDLSPCPASCGSGVVTTVTVSGRDPRTAPSSSCTAVA
SAASRPDSTHMVEARQDVPKPVLTSVMVPKSILAKPSSSPDPRYLSVPPSPNISTSESRSPPEGDTTLFL
SRLSTIWKGFINMQSVAKFVTKAYPVSGCFDYLSEDLPDTIHIGGRIAPKTVWDYVGKLKSSVSKELCLI
RFHPATEEEEVAYISLYSYFSSRGRFGVVANNNRHVKDLYLIPLSAQDPVPSKLLPFEGPGKRRLSGWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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