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Report for CCDS53493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53493.1 Public Homo sapiens 10 SUV39H2 24 110 108 CCDS HistoryNCBI Gene:79723Re-query CCDS DB by CCDS ID:53493.1Re-query CCDS DB by GeneID:79723See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53493.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378325.7 ENSP00000367576.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378325.7Link to Ensembl Protein Viewer:ENSP00000367576.3Re-query CCDS DB by Nucleotide ID:ENST00000378325Re-query CCDS DB by Protein ID:ENSP00000367576
Original member Current member NCBI NM_001193426.2 NP_001180355.1 Accepted alive Link to Nucleotide Sequence:NM_001193426.2Link to Protein Sequence:NP_001180355.1Re-query CCDS DB by Nucleotide ID:NM_001193426Re-query CCDS DB by Protein ID:NP_001180355Link to BLAST:NP_001180355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180355.1 230 Q9H5I1-3 230 100% 0 0

Chromosomal Locations for CCDS 53493.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 14878889 14878919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14881500 14881645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14896846 14896977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14899539 14899685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14901133 14901262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14902406 14902512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGCGGCGGTCGGGGCCGAGGCGCGAGGAGCTTGGTGTGTGCCTTGCCTAGTTTCACTTGATACTCTTC
AGGAATTATGTAGAAAAGAAAAGCTCACATGTAAATCGATTGGAATCACCAAAAGGAATCTAAACAATTA
TGAGGTGGAATACTTGTGTGACTACAAGGTAGTAAAGGATATGGAATATTATCTTGTAAAATGGAAAGGA
TGGCCAGATTCTACAAATACTTGGGAACCTTTGCAAAATCTGAAGTGCCCGTTACTGCTTCAGCAATTCT
CTAATGACAAGCATAATTATTTATCTCAGGTAATCACAAGTGAAGAAGCTGAAAGACGAGGACAGTTCTA
TGACAACAAGGGAATCACGTATCTCTTTGATCTGGACTATGAGTCTGATGAATTCACAGTGGATGCGGCT
CGATACGGCAATGTGTCTCATTTTGTGAATCACAGCTGTGACCCAAATCTTCAGGTGTTCAATGTTTTCA
TTGATAACCTCGATACTCGTCTTCCCCGAATAGCATTGTTTTCCACAAGAACCATAAATGCTGGAGAAGA
GCTGACTTTTGATTATCAAATGAAAGGTTCTGGAGATATATCTTCAGATTCTATTGACCACAGCCCAGCC
AAAAAGAGGGTCAGAACAGTATGTAAATGTGGAGCTGTGACTTGCAGAGGTTACCTCAACTGA

Translation (230 aa):
MAAVGAEARGAWCVPCLVSLDTLQELCRKEKLTCKSIGITKRNLNNYEVEYLCDYKVVKDMEYYLVKWKG
WPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAA
RYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPA
KKRVRTVCKCGAVTCRGYLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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