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Report for CCDS11729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11729.1 Public Homo sapiens 17 H3-3B 24 110 108 CCDS HistoryNCBI Gene:3021Re-query CCDS DB by CCDS ID:11729.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11729.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254810.8 ENSP00000254810.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254810.8Link to Ensembl Protein Viewer:ENSP00000254810.3Re-query CCDS DB by Nucleotide ID:ENST00000254810Re-query CCDS DB by Protein ID:ENSP00000254810
Original member Current member EBI ENST00000589599.5 ENSP00000465813.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589599.5Link to Ensembl Protein Viewer:ENSP00000465813.1Re-query CCDS DB by Nucleotide ID:ENST00000589599Re-query CCDS DB by Protein ID:ENSP00000465813
Original member Current member EBI ENST00000586607.5 ENSP00000466020.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586607.5Link to Ensembl Protein Viewer:ENSP00000466020.1Re-query CCDS DB by Nucleotide ID:ENST00000586607Re-query CCDS DB by Protein ID:ENSP00000466020
Original member Current member EBI ENST00000587560.5 ENSP00000468714.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000587560.5Link to Ensembl Protein Viewer:ENSP00000468714.1Re-query CCDS DB by Nucleotide ID:ENST00000587560Re-query CCDS DB by Protein ID:ENSP00000468714
Original member Current member NCBI NM_005324.5 NP_005315.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005324.5Link to Protein Sequence:NP_005315.1Re-query CCDS DB by Nucleotide ID:NM_005324Re-query CCDS DB by Protein ID:NP_005315Link to BLAST:NP_005315.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005315.1 136 P84243 136 100% 0 0

Chromosomal Locations for CCDS 11729.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75778595 75778723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75778810 75778963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75779047 75779174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGCCCGAACCAAGCAGACTGCTCGTAAGTCCACCGGTGGGAAAGCCCCCCGCAAACAGCTGGCCACGA
AA
GCCGCCAGGAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAGCCTCATCGCTACAGGCCCGGGACCGT
G
GCGCTTCGAGAGATTCGTCGTTATCAGAAGTCGACCGAGCTGCTCATCCGGAAGCTGCCCTTCCAGAGG
TTG
GTGAGGGAGATCGCGCAGGATTTCAAAACCGACCTGAGGTTTCAGAGCGCAGCCATCGGTGCGCTGC
AG
GAGGCTAGCGAAGCGTACCTGGTGGGTCTGTTCGAAGATACCAACCTGTGTGCCATCCACGCTAAGAG
A
GTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGAGAGAGAGCTTAA


Translation (136 aa):
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR
L
VREIAQDFKTDLRFQSAAIGALQ
EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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