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Report for CCDS11139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11139.1 Public Homo sapiens 17 ARHGEF15 24 110 108 CCDS HistoryNCBI Gene:22899Re-query CCDS DB by CCDS ID:11139.1Re-query CCDS DB by GeneID:22899See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11139.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361926.8 ENSP00000355026.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361926.8Link to Ensembl Protein Viewer:ENSP00000355026.3Re-query CCDS DB by Nucleotide ID:ENST00000361926Re-query CCDS DB by Protein ID:ENSP00000355026
Original member Current member EBI ENST00000421050.2 ENSP00000412505.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421050.2Link to Ensembl Protein Viewer:ENSP00000412505.1Re-query CCDS DB by Nucleotide ID:ENST00000421050Re-query CCDS DB by Protein ID:ENSP00000412505
Original member Current member NCBI NM_025014.2 NP_079290.1 Accepted alive Link to Nucleotide Sequence:NM_025014.2Link to Protein Sequence:NP_079290.1Re-query CCDS DB by Nucleotide ID:NM_025014Re-query CCDS DB by Protein ID:NP_079290Link to BLAST:NP_079290.1
Original member Current member NCBI NM_173728.4 NP_776089.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173728.4Link to Protein Sequence:NP_776089.2Re-query CCDS DB by Nucleotide ID:NM_173728Re-query CCDS DB by Protein ID:NP_776089Link to BLAST:NP_776089.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079290.1 841 O94989 841 100% 0 0
NP_776089.2 841 O94989 841 100% 0 0

Chromosomal Locations for CCDS 11139.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8312040 8312640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8312922 8313254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8313501 8313555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8314906 8314964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8315066 8315277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8315414 8315574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8315755 8315907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8316019 8316148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8318387 8318461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8318570 8318662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8318750 8318910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8319007 8319159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8319312 8319394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8319499 8319603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8320842 8320993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2526 nt):
ATGTCAGCCCAGTCCCTTCCTGCAGCAACACCCCCCACGCAGAAGCCCCCTCGGATCATCCGCCCCCGCC
CTCCTTCTCGTTCCAGGGCTGCCCAGTCCCCAGGGCCTCCCCACAATGGCTCCTCTCCACAAGAACTACC
CCGAAACTCCAATGATGCACCAACCCCAATGTGCACCCCCATCTTCTGGGAGCCCCCAGCTGCATCCCTC
AAGCCCCCTGCTCTTTTGCCCCCCTCAGCTTCTAGAGCCAGCCTCGACTCCCAGACTTCCCCAGACTCAC
CTTCCAGCACCCCCACACCTAGTCCAGTGTCCCGGCGCTCCGCCTCCCCAGAACCTGCTCCCCGGTCTCC
AGTCCCCCCACCCAAGCCGTCTGGGTCACCCTGCACGCCTCTGCTCCCCATGGCTGGAGTCCTGGCTCAG
AATGGCTCTGCCTCAGCTCCTGGCACTGTGCGGAGGCTGGCTGGCAGGTTTGAAGGGGGTGCTGAAGGCC
GGGCTCAGGATGCAGATGCCCCGGAGCCAGGTCTCCAAGCGAGAGCAGATGTGAATGGGGAGAGAGAAGC
TCCCCTCACCGGGAGTGGGTCCCAGGAGAACGGTGCTCCAGATGCTGGCCTGGCCTGCCCTCCCTGCTGC
CCCTGTGTCTGCCACACCACCCGGCCTGGCCTGGAGCTCAGATGGGTGCCTGTGGGGGGCTATGAGGAGG
TCCCCAGGGTCCCCCGTCGGGCCTCCCCGCTGCGGACCTCTCGCTCCCGCCCCCACCCTCCAAGCATCGG
TCACCCTGCCGTTGTCCTCACATCCTACCGCTCCACTGCTGAGCGCAAACTCCTGCCACTCCTCAAGCCT
CCCAAACCAACTCGTGTCAGGCAGGATGCCACCATTTTCGGGGACCCCCCACAGCCAGATCTTGATCTGC
TTTCTGAAGATGGAATCCAAACAGGGGACAGTCCTGATGAAGCTCCTCAGAATACTCCTCCAGCAACTGT
GGAGGGGAGGGAAGAGGAGGGGCTAGAGGTGCTGAAGGAGCAGAATTGGGAGCTGCCCCTGCAGGATGAA
CCTCTGTACCAGACCTACCGAGCAGCCGTGCTGTCAGAGGAGCTGTGGGGGGTGGGTGAGGATGGGAGTC
CTTCTCCAGCAAATGCTGGAGATGCACCCACCTTCCCACGACCCCCTGGACCTCGCAACACCCTGTGGCA
GGAGCTTCCGGCTGTGCAAGCCAGCGGTCTTCTGGATACCCTCAGCCCCCAGGAGAGGCGCATGCAGGAG
AGTCTTTTCGAGGTGGTGACGTCCGAGGCTTCCTACCTGCGCTCCCTGCGGCTGCTGACCGACACCTTCG
TGCTGAGCCAGGCACTCCGGGACACGCTCACCCCCCGTGATCACCACACACTCTTCTCCAATGTGCAGCG
AGTCCAGGGAGTCAGCGAGCGGTTTCTAGCAACGCTCCTGTCCCGTGTGCGCTCTTCCCCCCACATCAGC
GACTTGTGTGATGTGGTGCATGCCCACGCTGTGGGGCCTTTCTCGGTGTATGTGGATTATGTGCGGAACC
AGCAGTATCAGGAGGAGACCTACAGCCGCCTCATGGACACCAACGTGCGCTTCTCCGCCGAGCTGCGCCG
GCTGCAGAGCCTCCCTAAGTGTGAGCGGCTCCCGCTGCCGTCCTTCCTGCTACTGCCCTTCCAGCGCATC
ACCCGGCTGCGCATGCTGCTGCAGAATATCCTGCGCCAGACAGAAGAGGGGTCCAGCCGTCAGGAGAATG
CCCAGAAGGCCCTGGGTGCTGTCAGCAAGATCATCGAGCGTTGCAGCGCTGAGGTGGGGCGCATGAAGCA
GACTGAAGAGCTGATCCGGCTCACCCAAAGGCTGCGCTTCCACAAAGTCAAGGCCCTGCCCCTGGTCTCC
TGGTCACGGCGCCTGGAATTCCAGGGAGAGCTGACTGAGTTAGGGTGCCGGAGGGGGGGCGTGCTCTTTG
CCTCGCGCCCCCGCTTCACCCCTCTTTGCCTGCTGCTCTTTAGCGACCTGCTGCTCATCACTCAGCCTAA
GAGTGGGCAGCGGTTACAGGTTCTGGACTATGCCCATCGCTCCCTGGTCCAGGCCCAGCAGGTTCCGGAT
CCATCTGGACCCCCTACCTTCCGCCTCTCCCTTCTCAGCAACCACCAGGGCCGCCCCACCCACCGACTAC
TCCAAGCTTCTTCCCTATCAGACATGCAGCGCTGGCTGGGAGCCTTCCCAACCCCAGGCCCCCTTCCCTG
CTCCCCAGACACCATCTATGAGGACTGTGACTGTTCCCAGGAACTGTGTTCAGAGTCGTCTGCACCTGCC
AAGACTGAAGGACGGAGTCTGGAGTCCAGGGCTGCCCCCAAACACCTGCACAAGACCCCTGAAGGTTGGC
TGAAGGGGCTTCCTGGGGCCTTCCCTGCCCAGCTGGTGTGTGAAGTCACAGGGGAACACGAAAGGAGGAG
GCACCTTCGCCAGAACCAGAGGCTTCTCGAGGCTGTTGGATCTTCTTCAGGCACCCCCAATGCCCCCCCA
CCCTAA

Translation (841 aa):
MSAQSLPAATPPTQKPPRIIRPRPPSRSRAAQSPGPPHNGSSPQELPRNSNDAPTPMCTPIFWEPPAASL
KPPALLPPSASRASLDSQTSPDSPSSTPTPSPVSRRSASPEPAPRSPVPPPKPSGSPCTPLLPMAGVLAQ
NGSASAPGTVRRLAGRFEGGAEGRAQDADAPEPGLQARADVNGEREAPLTGSGSQENGAPDAGLACPPCC
PCVCHTTRPGLELRWVPVGGYEEVPRVPRRASPLRTSRSRPHPPSIGHPAVVLTSYRSTAERKLLPLLKP
PKPTRVRQDATIFGDPPQPDLDLLSEDGIQTGDSPDEAPQNTPPATVEGREEEGLEVLKEQNWELPLQDE
PLYQTYRAAVLSEELWGVGEDGSPSPANAGDAPTFPRPPGPRNTLWQELPAVQASGLLDTLSPQERRMQE
SLFEVVTSEASYLRSLRLLTDTFVLSQALRDTLTPRDHHTLFSNVQRVQGVSERFLATLLSRVRSSPHIS
DLCDVVHAHAVGPFSVYVDYVRNQQYQEETYSRLMDTNVRFSAELRRLQSLPKCERLPLPSFLLLPFQRI
TRLRMLLQNILRQTEEGSSRQENAQKALGAVSKIIERCSAEVGRMKQTEELIRLTQRLRFHKVKALPLVS
WSRRLEFQGELTELGCRRGGVLFASRPRFTPLCLLLFSDLLLITQPKSGQRLQVLDYAHRSLVQAQQVPD
PSGPPTFRLSLLSNHQGRPTHRLLQASSLSDMQRWLGAFPTPGPLPCSPDTIYEDCDCSQELCSESSAPA
KTEGRSLESRAAPKHLHKTPEGWLKGLPGAFPAQLVCEVTGEHERRRHLRQNQRLLEAVGSSSGTPNAPP
P


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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